| APIS family ID | APIS136 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | restriction-modification (RM) | |||||||||||||
| CLAN ID | CLAN045 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | PMID:22102579 | |||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | ||||||||||||||
| Phrog | phrog_23568,phrog_28718,phrog_8559 | |||||||||||||
| Host taxa | d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pasteurellales;f__Pasteurellaceae;g__Haemophilus;s__Haemophilus influenzae | |||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | hin1523, nma1821 and hia5 are all DNA adenine N6-methyltransferases. Plasmid DNA overexpressing these novel DNA methyltransferases was resistant to cleavage by many restriction enzymes sensitive to adenine methylation. | |||||||||||||
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| AF-P44243-F1-model_v4 | 1 | 296 | 1 | 296 | 0.9849 | 0.9817 |
| AF-Q8ZMS3-F1-model_v4 | 23 | 296 | 1 | 261 | 0.6785 | 0.6458 |
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP000224250460.pdb | 21 | 296 | 1 | 275 | 0.9754 | 0.936 |
| MGYP000525090566.pdb | 18 | 296 | 1 | 277 | 0.9702 | 0.933 |
| MGYP001014481033.pdb | 15 | 296 | 1 | 279 | 0.9546 | 0.9186 |
| MGYP002742627840.pdb | 19 | 296 | 1 | 276 | 0.9558 | 0.9169 |
| MGYP002655539568.pdb | 16 | 296 | 1 | 277 | 0.9459 | 0.9055 |
| MGYP002793905296.pdb | 12 | 296 | 1 | 279 | 0.9337 | 0.9039 |
| MGYP003408833989.pdb | 18 | 296 | 1 | 273 | 0.9498 | 0.9037 |
| MGYP003538752215.pdb | 18 | 296 | 1 | 273 | 0.9451 | 0.902 |
| MGYP002746980409.pdb | 18 | 296 | 1 | 274 | 0.9399 | 0.8957 |
| MGYP000832751563.pdb | 15 | 296 | 1 | 276 | 0.9367 | 0.8953 |
| Fam ID | Seed protein | Member count | Model | Alignment | APIS136 | AEV40923.1 | 386 | HMM model | Member alignment |
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