| APIS family ID | APIS146 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN003 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF07275.16 | |||||||||||||
| Phrog | ||||||||||||||
| Host taxa | ;;;;;; | |||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending restriction-modification (RM) because it belongs to the same clan as family APIS003,ardu which has seed protein. | |||||||||||||
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| AF-A0A0H3GZQ3-F1-model_v4 | 1 | 197 | 7 | 168 | 0.7584 | 0.6779 |
| AF-A0A132ZEK5-F1-model_v4 | 1 | 197 | 4 | 166 | 0.7418 | 0.6568 |
| AF-A0A132P918-F1-model_v4 | 1 | 197 | 4 | 166 | 0.7405 | 0.6539 |
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP001310983550.pdb | 1 | 197 | 3 | 173 | 0.8727 | 0.8117 |
| MGYP003388279993.pdb | 1 | 197 | 4 | 174 | 0.8654 | 0.8063 |
| MGYP003298451151.pdb | 1 | 197 | 1 | 170 | 0.8727 | 0.7993 |
| MGYP001607116293.pdb | 1 | 197 | 3 | 173 | 0.8594 | 0.797 |
| MGYP003153958716.pdb | 1 | 197 | 7 | 168 | 0.8638 | 0.7928 |
| MGYP002642003215.pdb | 1 | 197 | 5 | 168 | 0.8665 | 0.791 |
| MGYP000916117031.pdb | 1 | 197 | 10 | 180 | 0.8259 | 0.7795 |
| MGYP000365514984.pdb | 1 | 197 | 12 | 177 | 0.8312 | 0.7787 |
| MGYP000682544543.pdb | 3 | 197 | 1 | 159 | 0.8763 | 0.7767 |
| MGYP000663776880.pdb | 1 | 197 | 7 | 173 | 0.8396 | 0.7754 |
| Fam ID | Seed protein | Member count | Model | Alignment | APIS146 | IMGVR_UViG_3300025528_000007|3300025528|Ga0207867_10002597 | 24 | HMM model | Member alignment |
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