| APIS family ID | APIS147 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN003 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF07275.16 | |||||||||||||
| Phrog | ||||||||||||||
| Host taxa | ;;;;;; | |||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending restriction-modification (RM) because it belongs to the same clan as family APIS003,ardu which has seed protein. | |||||||||||||
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| AF-A0A132ZEK5-F1-model_v4 | 3 | 179 | 2 | 167 | 0.7797 | 0.7191 |
| AF-A0A132P918-F1-model_v4 | 3 | 179 | 2 | 166 | 0.7728 | 0.7093 |
| AF-A0A0H3GZQ3-F1-model_v4 | 3 | 178 | 6 | 168 | 0.755 | 0.6958 |
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP000536315862.pdb | 1 | 179 | 4 | 172 | 0.8759 | 0.8356 |
| MGYP000349663159.pdb | 1 | 179 | 2 | 172 | 0.8762 | 0.8344 |
| MGYP003150784147.pdb | 1 | 179 | 3 | 171 | 0.872 | 0.828 |
| MGYP001435754846.pdb | 1 | 179 | 1 | 171 | 0.8714 | 0.8246 |
| MGYP000193280088.pdb | 2 | 179 | 1 | 168 | 0.8758 | 0.8238 |
| MGYP001612770019.pdb | 1 | 179 | 16 | 189 | 0.8695 | 0.8226 |
| MGYP003145215081.pdb | 1 | 179 | 3 | 174 | 0.8515 | 0.8156 |
| MGYP003642735362.pdb | 2 | 179 | 5 | 172 | 0.8547 | 0.8129 |
| MGYP001485142862.pdb | 1 | 179 | 2 | 171 | 0.8563 | 0.8092 |
| MGYP001318506529.pdb | 1 | 179 | 3 | 173 | 0.8527 | 0.8086 |
| Fam ID | Seed protein | Member count | Model | Alignment | APIS147 | IMGVR_UViG_3300027857_000008|3300027857|Ga0209166_1000054018 | 11 | HMM model | Member alignment |
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