| APIS family ID | APIS148 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | bacteriophage exclusion (BREX) | |||||||||||||
| CLAN ID | CLAN058 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | PMID:34326207 | |||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | ||||||||||||||
| Phrog | phrog_11733,phrog_11733 | |||||||||||||
| Host taxa | d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio; | |||||||||||||
| Gene Location | Start: 10172; End: 10306; Strand: + | |||||||||||||
| Description | Clinical phage ICP1 overcomes cocirculating SXT ICEs through acquisition of epigenetic RM as well as an anti-BREX protein, OrbA. | |||||||||||||
| Genome accession | Start | End | Strand | Protein ID | Length | Molecular weight | Charge | Isoelectric point | Function | Phrog | PFAM |
|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_015157.1 | 7839 | 8078 | - | YP_004250961.1 | 79 | 8970.99 | -11.0 | 3.7080 | hypothetical protein | phrog_10665 | |
| NC_015157.1 | 8427 | 8777 | - | YP_004250962.1 | 116 | 13663.62 | -4.0 | 4.5673 | hypothetical protein | phrog_11687 | |
| NC_015157.1 | 9093 | 9314 | - | YP_004250963.1 | 73 | 8981.36 | -5.0 | 4.1954 | hypothetical protein | phrog_16863 ; phrog_34196 | |
| NC_015157.1 | 9326 | 9595 | - | YP_004250964.1 | 89 | 10151.81 | 3.0 | 9.2644 | hypothetical protein | phrog_4653 ; phrog_19513 | |
| NC_015157.1 | 9712 | 9924 | + | YP_004250965.1 | 70 | 8400.53 | 1.5 | 8.4124 | hypothetical protein | phrog_16587 | |
| NC_015157.1 | 10172 | 10306 | + | YP_004250966.1 | 44 | 5042.84 | 2.5 | 9.0663 | hypothetical protein | phrog_11733 ; phrog_11733 | |
| NC_015157.1 | 10429 | 10518 | - | YP_004250967.1 | 29 | 3122.74 | 3.0 | 9.8624 | hypothetical protein | ||
| NC_015157.1 | 10865 | 11086 | - | YP_004250968.1 | 73 | 8655.75 | -0.5 | 6.3054 | hypothetical protein | phrog_8842 | |
| NC_015157.1 | 11087 | 12082 | - | YP_004250969.1 | 331 | 38721.82 | 19.5 | 9.6267 | homing endonuclease | phrog_10088 ; phrog_655 ; phrog_4794 | |
| NC_015157.1 | 12674 | 12853 | - | YP_004250970.1 | 59 | 7067.01 | -3.5 | 4.4627 | hypothetical protein | phrog_9117 | |
| NC_015157.1 | 12911 | 13138 | - | YP_004250971.1 | 75 | 8192.01 | -12.0 | 3.6311 | hypothetical protein | phrog_10039 ; phrog_8027 |
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Fam ID | Seed protein | Member count | Model | Alignment | APIS148 | YP_004250966.1 | 7 | HMM model | Member alignment |
|---|
| Member | pident | evalue | bitscore | qcovs | phage | host | SourceDB | Pfam | Phrog |
|---|---|---|---|---|---|---|---|---|---|
| MGV-GENOME-0372901_7 | 99.600 | 8.226E-26 | 95 | 1.000% | Vibrio | MGV | phrog_11733 | ||
| MH310933_00019 | 97.200 | 5.528E-25 | 93 | 1.000% | Vibrio phage ICP1_2011_A | Vibrio | INPHARED | phrog_11733 | |
| YP_004250966.1 | 100.000 | 8.226E-26 | 95 | 1.000% | Vibrio phage ICP1 | Vibrio | NCBI | phrog_11733 phrog_11733 | |
| IMGVR_UViG_3300023192_002208|3300023192|Ga0255805_100000442 | 90.700 | 2.517E-19 | 76 | 0.886% | IMGVR | phrog_11733 | |||
| MW794173_00022 | 99.200 | 1.130E-25 | 94 | 1.000% | Vibrio phage ICP1 | Vibrio | INPHARED | phrog_11733 | |
| MW794152_00017 | 98.800 | 1.977E-20 | 79 | 0.841% | Vibrio phage ICP1 | Vibrio | INPHARED | phrog_11733 | |
| IMGVR_UViG_3300037962_000518|3300037962|Ga0183746_00032_138917_139048 | 91.500 | 1.333E-19 | 77 | 0.886% | IMGVR | phrog_11733 |