APIS family ID | APIS152 | |||||||||||||
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Inhibited defense system | restriction-modification (RM) | |||||||||||||
CLAN ID | CLAN045 | |||||||||||||
Seed protein property |
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Phage property |
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PMID/References | PMID:14715260 | |||||||||||||
PDB structures | ; | |||||||||||||
Pfam domains | PF02086.20,PF00145.22,PF02086.20,PF00145.22 | |||||||||||||
Phrog | phrog_23296,phrog_23296,phrog_23217,phrog_23217,phrog_38038,phrog_38038,phrog_13621,phrog_13621,phrog_16528,phrog_16528,phrog_8411,phrog_8411,phrog_17284,phrog_17284,phrog_26324,phrog_26324,phrog_363,phrog_363,phrog_56,phrog_56 | |||||||||||||
Host taxa | d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia; | |||||||||||||
Gene Location | Start: 66412; End: 68676; Strand: + | |||||||||||||
Description | DNA methyltransferase (M.EcoP1I) encoded by prophage P1, may protect the phage genome from restriction by type III restriction enzymes and thus could be considered as an anti-restriction system. |
Genome accession | Start | End | Strand | Protein ID | Length | Molecular weight | Charge | Isoelectric point | Function | Phrog | PFAM |
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NC_005856.1 | 63520 | 63942 | - | YP_006532.1 | 140 | 15744.94 | 2.5 | 8.0590 | PpfA | ||
NC_005856.1 | 63982 | 64827 | - | YP_006533.1 | 281 | 29310.84 | -9.0 | 4.4746 | UpfB | phrog_1559 ; phrog_36566 | |
NC_005856.1 | 64779 | 65063 | - | YP_006534.1 | 94 | 9510.63 | -0.5 | 6.1925 | PAAR motif of membran proteins | phrog_281 | PF05488.18 |
NC_005856.1 | 65233 | 65517 | + | YP_006535.1 | 94 | 10782.35 | 2.0 | 7.8584 | nucleoside triphosphate pyrophosphohydrolase | phrog_2213 | |
NC_005856.1 | 65510 | 66415 | + | YP_006536.1 | 301 | 33638.63 | -4.5 | 5.2997 | exonuclease recombination-associated | phrog_21369 ; phrog_724 ; phrog_13439 | PF04381.17 |
NC_005856.1 | 66412 | 68676 | + | YP_006537.1 | 754 | 83627.86 | 6.0 | 7.0777 | DNA methyltransferase | phrog_16528 ; phrog_16528 ; phrog_56 ; phrog_56 ; phrog_23296 ; phrog_23296 ; phrog_23217 ; phrog_23217 ; phrog_26324 ; phrog_26324 ; phrog_363 ; phrog_363 ; phrog_13621 ; phrog_13621 ; phrog_8411 ; phrog_8411 ; phrog_38038 ; phrog_38038 ; phrog_17284 ; phrog_17284 | PF02086.20 ;PF00145.22 ;PF02086.20 ;PF00145.22 |
NC_005856.1 | 69472 | 69849 | - | YP_006538.1 | 125 | 13818.78 | 7.0 | 8.0823 | Plp | ||
NC_005856.1 | 69850 | 70041 | - | YP_006539.1 | 63 | 7093.29 | 0.5 | 6.9725 | Upl | phrog_14500 ; phrog_7444 | |
NC_005856.1 | 70233 | 70658 | + | YP_006540.1 | 141 | 15188.37 | -4.0 | 4.6304 | tellurite resistance | phrog_9865 ; phrog_632 | PF05099.18 |
NC_005856.1 | 70658 | 70822 | + | YP_006541.1 | 54 | 5753.05 | 1.0 | 8.9045 | TciB-like inhibition of cell division or resistance to colicin | phrog_1470 | PF13064.11 |
NC_005856.1 | 70822 | 70929 | + | YP_006542.1 | 35 | 3720.48 | 0.5 | 7.0034 | TciC | phrog_23152 |
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Fam ID | Seed protein | Member count | Model | Alignment | APIS152 | YP_006537.1 | 149 | HMM model | Member alignment |
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