| APIS family ID | APIS154 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN038 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF09588.15 | |||||||||||||
| Phrog | ||||||||||||||
| Host taxa | ;;;;;; | |||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending CRISPR-Cas evasion by DNA repair because it belongs to the same clan as family APIS185 which has seed protein. | |||||||||||||
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| AF-A0A0H3GNV3-F1-model_v4 | 2 | 274 | 1 | 207 | 0.8008 | 0.6825 |
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP001327248204.pdb | 2 | 252 | 1 | 251 | 0.9064 | 0.8403 |
| MGYP001636525833.pdb | 1 | 263 | 6 | 277 | 0.8841 | 0.8235 |
| MGYP001584478192.pdb | 1 | 191 | 3 | 194 | 0.9551 | 0.7961 |
| MGYP001617366467.pdb | 3 | 191 | 3 | 190 | 0.9571 | 0.791 |
| MGYP000267747872.pdb | 2 | 184 | 1 | 183 | 0.9654 | 0.7903 |
| MGYP001618736178.pdb | 1 | 182 | 2 | 183 | 0.9622 | 0.7882 |
| MGYP001582263125.pdb | 1 | 188 | 1 | 189 | 0.9511 | 0.7881 |
| MGYP001275816148.pdb | 1 | 192 | 1 | 194 | 0.9425 | 0.786 |
| MGYP000007684401.pdb | 6 | 198 | 1 | 195 | 0.9446 | 0.7817 |
| MGYP001566746612.pdb | 1 | 185 | 4 | 185 | 0.9445 | 0.7755 |
| Fam ID | Seed protein | Member count | Model | Alignment | APIS154 | IMGVR_UViG_3300020045_017294|3300020045|Ga0206662_10170475 | 127 | HMM model | Member alignment |
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