| APIS family ID | APIS156 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN060 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF03374.19,PF08346.17 | |||||||||||||
| Phrog | phrog_5817,phrog_377,phrog_14211,phrog_6904,phrog_9438,phrog_15968 | |||||||||||||
| Host taxa | d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides; | |||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending SOS response because it belongs to the same clan as family APIS178 which has seed protein. | |||||||||||||
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP003309477324.pdb | 66 | 218 | 1 | 147 | 0.7011 | 0.5772 |
| MGYP003448665415.pdb | 86 | 218 | 40 | 177 | 0.7488 | 0.5441 |
| MGYP002627577811.pdb | 93 | 218 | 1 | 124 | 0.7591 | 0.5367 |
| MGYP000979067201.pdb | 98 | 218 | 41 | 160 | 0.7543 | 0.5218 |
| MGYP003571553135.pdb | 79 | 218 | 15 | 154 | 0.655 | 0.5111 |
| MGYP003293558061.pdb | 70 | 218 | 6 | 153 | 0.6424 | 0.4869 |
| MGYP002761530632.pdb | 91 | 218 | 121 | 249 | 0.7535 | 0.4382 |
| MGYP002769516272.pdb | 87 | 218 | 119 | 250 | 0.7367 | 0.4361 |
| Fam ID | Seed protein | Member count | Model | Alignment | APIS156 | IMGVR_UViG_3300045988_166823|3300045988|Ga0495776_111997_99927_100583 | 27 | HMM model | Member alignment |
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