| APIS family ID | APIS157 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN039 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF07728.19,PF00004.34,PF07726.16 | |||||||||||||
| Phrog | phrog_249 | |||||||||||||
| Host taxa | d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Succinivibrionaceae;g__Succinivibrio; | |||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending restriction-modification (RM) because it belongs to the same clan as family APIS166 which has seed protein. | |||||||||||||
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| AF-A0A0H3H502-F1-model_v4 | 1 | 305 | 1 | 281 | 0.9386 | 0.8692 |
| AF-Q51481-F1-model_v4 | 27 | 305 | 1 | 260 | 0.9156 | 0.8165 |
| AF-Q2G2J8-F1-model_v4 | 32 | 304 | 1 | 263 | 0.8983 | 0.8056 |
| AF-K0FAA2-F1-model_v4 | 1 | 319 | 2 | 293 | 0.8011 | 0.7494 |
| AF-X8F327-F1-model_v4 | 1 | 310 | 5 | 289 | 0.7961 | 0.741 |
| AF-P71922-F1-model_v4 | 1 | 310 | 8 | 291 | 0.7915 | 0.7389 |
| AF-K0EW51-F1-model_v4 | 1 | 310 | 8 | 294 | 0.7831 | 0.7345 |
| AF-O53705-F1-model_v4 | 2 | 306 | 1 | 295 | 0.7771 | 0.7335 |
| AF-Q9I0D5-F1-model_v4 | 4 | 321 | 1 | 281 | 0.7807 | 0.7159 |
| AF-P33348-F1-model_v4 | 5 | 313 | 20 | 359 | 0.7604 | 0.7069 |
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP002625567588.pdb | 1 | 312 | 1 | 314 | 0.9589 | 0.9325 |
| MGYP002627237152.pdb | 1 | 310 | 1 | 310 | 0.9489 | 0.9248 |
| MGYP002521234317.pdb | 1 | 314 | 1 | 312 | 0.9442 | 0.9096 |
| MGYP001281949795.pdb | 1 | 309 | 4 | 322 | 0.9197 | 0.9038 |
| MGYP001557083938.pdb | 1 | 310 | 4 | 315 | 0.9272 | 0.9036 |
| MGYP000704697880.pdb | 1 | 309 | 5 | 323 | 0.9191 | 0.9016 |
| MGYP001774180101.pdb | 1 | 311 | 5 | 317 | 0.9233 | 0.8978 |
| MGYP000089807778.pdb | 1 | 305 | 3 | 309 | 0.9259 | 0.8974 |
| MGYP001773449981.pdb | 1 | 311 | 3 | 315 | 0.9188 | 0.8971 |
| MGYP003646054441.pdb | 1 | 310 | 3 | 318 | 0.9207 | 0.8963 |
| Fam ID | Seed protein | Member count | Model | Alignment | APIS157 | MGV-GENOME-0240670_38 | 5 | HMM model | Member alignment |
|---|
| Member | pident | evalue | bitscore | qcovs | phage | host | SourceDB | Pfam | Phrog |
|---|---|---|---|---|---|---|---|---|---|
| MGV-GENOME-0240670_38 | 100.000 | 1.574E-213 | 652 | 1.000% | Succinivibrio | MGV | PF07728 PF00004 PF07726 | phrog_249 | |
| IMGVR_UViG_3300045988_177861|3300045988|Ga0495776_116346_46634_47608 | 94.100 | 1.070E-209 | 641 | 0.997% | Succinivibrio | IMGVR | PF07728 PF00004 PF07726 | phrog_249 | |
| IMGVR_UViG_3300045988_180502|3300045988|Ga0495776_136850_3133_4107 | 94.900 | 5.043E-212 | 648 | 0.997% | Succinivibrio | IMGVR | PF07728 PF00004 PF07726 | phrog_249 | |
| MGV-GENOME-0354100_3 | 94.900 | 5.043E-212 | 648 | 0.997% | Succinivibrio | MGV | PF07728 PF00004 PF07726 | phrog_249 | |
| MGV-GENOME-0359478_55 | 94.100 | 1.070E-209 | 641 | 0.997% | Succinivibrio | MGV | PF07728 PF00004 PF07726 | phrog_249 |