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Seed proteins  | Seed genomic context  | Seed protein 3D structures  |  Structural homologs  |  Family infomation  | Homology to other families  | Family members, sources, and their hosts  

Seed protein information help

APIS family ID APIS161
Inhibited defense system
CLAN ID CLAN045
Seed protein property
Accession ID Gene name Protein length Molecular weight Isoelectric point Charge
MH160767_00056
gene_page: 1095 121736.85 8.3999 27.0
Phage property
Phage Assembly id
MH160767
PMID/References
PDB structures ;
Pfam domains PF02086.20,PF00145.22,PF14528.11,PF13403.11,PF02086.20,PF00145.22,PF14528.11,PF13403.11
Phrog phrog_23296,phrog_23296,phrog_23217,phrog_23217,phrog_38038,phrog_38038,phrog_36001,phrog_36001,phrog_16528,phrog_16528,phrog_28563,phrog_28563,phrog_17284,phrog_17284,phrog_26324,phrog_26324,phrog_363,phrog_363,phrog_56,phrog_56
Host taxa d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__unclassified Escherichia species
Gene Location Start: 57198;  End: 60485;  Strand: +
Description
Note This family does not have seed protein, but we infer its function is defending restriction-modification (RM) because it belongs to the same clan as family APIS107,APIS136,APIS152 which has seed protein.

Seed genomic context      Download table help

Genome accession Start End Strand Protein ID Length Molecular weight Charge Isoelectric point Function Phrog PFAM
MH160767 53736 54128 - MH160767_00051 130 14776.47 -10.5 4.4369 hypothetical protein phrog_1453
MH160767 54306 54728 - MH160767_00052 140 15762.98 2.5 8.0590 Rz-like spanin
MH160767 54768 55556 - MH160767_00053 262 27185.38 -12.0 4.2518 hypothetical protein phrog_1559 ; phrog_36566
MH160767 56019 56303 + MH160767_00054 94 10794.40 2.0 7.8584 nucleoside triphosphate pyrophosphohydrolase phrog_2213
MH160767 56296 57201 + MH160767_00055 301 33596.51 -5.5 5.1456 Recombination-associated protein RdgC phrog_21369 ; phrog_724 ; phrog_13439 PF04381.17
MH160767 57198 60485 + MH160767_00056 1095 121736.85 27.0 8.3999 DNA methyltransferase phrog_16528 ; phrog_16528 ; phrog_56 ; phrog_56 ; phrog_23296 ; phrog_23296 ; phrog_36001 ; phrog_36001 ; phrog_23217 ; phrog_23217 ; phrog_26324 ; phrog_26324 ; phrog_363 ; phrog_363 ; phrog_28563 ; phrog_28563 ; phrog_38038 ; phrog_38038 ; phrog_17284 ; phrog_17284 PF02086.20 ;PF00145.22 ;PF14528.11 ;PF13403.11 ;PF02086.20 ;PF00145.22 ;PF14528.11 ;PF13403.11
MH160767 61641 61769 + MH160767_00060 42 4876.63 2.0 9.1026 hypothetical protein phrog_8025
MH160767 62265 62501 + MH160767_00061 78 9042.98 5.0 9.9227 membrane protein
MH160767 62482 63309 + MH160767_00062 275 30170.52 -0.5 6.0581 lipoprotein phrog_21428 ; phrog_200 ; phrog_38808 PF01145.30
MH160767 63693 65057 + MH160767_00064 454 50438.16 -13.5 4.7333 Replicative DNA helicase phrog_19347 ; phrog_19 ; phrog_11530 PF03796.20 ;PF00772.26 ;PF13481.11
MH160767 65057 66055 + MH160767_00065 332 37365.70 -3.5 5.8316 hypothetical protein phrog_2518 PF00534.25

Seed genomic context- JBrowse     

Predicted 3D structure by alphafold2 with pTM = 0.42 Download help

pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;      Download help

Structural homologs

No homologs found in AlphaFold database

No homologs found in esmfold database

Family information      Download help

Fam ID Seed protein Member count Model Alignment
APIS161 MH160767_00056 27 HMM model Member alignment

Host Taxa distribution

Length distribution

Homology to other families       help

Clan ID: CLAN045

APIS161 has no similar APIS family.

Family members, sources, and their hosts        help

Results of representative protein blast against members.
Member pident evalue bitscore qcovs phage host SourceDB Pfam Phrog
IMGVR_UViG_3300015177_000010|3300015177|Ga0183240_10351429 97.700 0.000E+00 2257 1.000% Escherichia IMGVR PF02086 PF00145 PF14528 PF13403 phrog_16528 phrog_56 phrog_23296 phrog_36001 phrog_23217 phrog_26324 phrog_363 phrog_28563 phrog_13621 phrog_8411 phrog_38038 phrog_17284
IMGVR_UViG_2548876947_000004|2548876947|2550457098 97.400 0.000E+00 2247 1.000% Escherichia coli IMGVR PF02086 PF00145 PF14528 PF13403 phrog_16528 phrog_56 phrog_23296 phrog_36001 phrog_23217 phrog_26324 phrog_363 phrog_28563 phrog_13621 phrog_8411 phrog_38038 phrog_17284
IMGVR_UViG_2537562191_000039|2537562191|2540116219 90.100 0.000E+00 1933 0.935% Escherichia coli IMGVR PF02086 PF00145 PF14528 PF13403 phrog_16528 phrog_56 phrog_23296 phrog_36001 phrog_23217 phrog_363 phrog_28563 phrog_38038 phrog_17284
IMGVR_UViG_2684622670_000009|2684622670|2685303934 95.300 0.000E+00 2193 1.000% Escherichia albertii IMGVR PF02086 PF00145 PF14528 PF13403 phrog_16528 phrog_56 phrog_23296 phrog_36001 phrog_23217 phrog_26324 phrog_363 phrog_28563 phrog_13621 phrog_38038 phrog_17284
IMGVR_UViG_2698536372_000019|2698536372|2698824739 98.700 0.000E+00 2281 1.000% Escherichia coli IMGVR PF02086 PF00145 PF14528 PF13403 phrog_16528 phrog_56 phrog_23296 phrog_36001 phrog_23217 phrog_26324 phrog_363 phrog_28563 phrog_13621 phrog_8411 phrog_38038 phrog_17284
IMGVR_UViG_2744054912_000002|2744054912|2746147176 98.000 0.000E+00 2264 1.000% Escherichia coli IMGVR PF02086 PF00145 PF14528 PF13403 phrog_16528 phrog_56 phrog_23296 phrog_36001 phrog_23217 phrog_26324 phrog_363 phrog_28563 phrog_13621 phrog_38038 phrog_17284
IMGVR_UViG_2548876964_000024|2548876964|2550547042 99.000 0.000E+00 2291 1.000% Escherichia coli IMGVR PF02086 PF00145 PF14528 PF13403 phrog_16528 phrog_56 phrog_23296 phrog_36001 phrog_23217 phrog_26324 phrog_363 phrog_28563 phrog_38038 phrog_17284
IMGVR_UViG_2718218168_000001|2718218168|2720380556 97.900 0.000E+00 2262 1.000% Escherichia coli IMGVR PF02086 PF00145 PF14528 PF13403 phrog_16528 phrog_56 phrog_23296 phrog_36001 phrog_23217 phrog_26324 phrog_363 phrog_28563 phrog_13621 phrog_8411 phrog_38038 phrog_17284
IMGVR_UViG_2534681604_000004|2534681604|2534705126 97.500 0.000E+00 2250 1.000% Escherichia fergusonii IMGVR PF02086 PF00145 PF14528 PF13403 phrog_16528 phrog_56 phrog_23296 phrog_36001 phrog_23217 phrog_26324 phrog_363 phrog_28563 phrog_13621 phrog_8411 phrog_38038 phrog_17284
IMGVR_UViG_2734482781_000002|2734482781|2737366647 97.600 0.000E+00 2252 1.000% Escherichia coli IMGVR PF02086 PF00145 PF14528 PF13403 phrog_16528 phrog_56 phrog_23296 phrog_36001 phrog_23217 phrog_26324 phrog_363 phrog_28563 phrog_13621 phrog_8411 phrog_38038 phrog_17284
IMGVR_UViG_2529293015_000003|2529293015|2530887095 97.800 0.000E+00 2259 1.000% Escherichia coli IMGVR PF02086 PF00145 PF14528 PF13403 phrog_16528 phrog_56 phrog_23296 phrog_36001 phrog_23217 phrog_26324 phrog_363 phrog_28563 phrog_13621 phrog_8411 phrog_38038 phrog_17284
IMGVR_UViG_2675903433_000026|2675903433|2677951991 98.100 0.000E+00 2265 1.000% Escherichia coli IMGVR PF02086 PF00145 PF14528 PF13403 phrog_16528 phrog_56 phrog_23296 phrog_23217 phrog_26324 phrog_363 phrog_28563 phrog_13621 phrog_8411 phrog_38038 phrog_17284
uvig_307493_20 98.000 0.000E+00 2264 1.000% GPD PF02086 PF00145 PF14528 PF13403 phrog_16528 phrog_56 phrog_23296 phrog_36001 phrog_23217 phrog_26324 phrog_363 phrog_28563 phrog_13621 phrog_8411 phrog_38038 phrog_17284
IMGVR_UViG_2657245664_000006|2657245664|2659876919 97.800 0.000E+00 2258 1.000% Escherichia coli IMGVR PF02086 PF00145 PF14528 PF13403 phrog_16528 phrog_56 phrog_23296 phrog_36001 phrog_23217 phrog_26324 phrog_363 phrog_28563 phrog_13621 phrog_8411 phrog_38038 phrog_17284
IMGVR_UViG_2713896768_000016|2713896768|2714162715 97.300 0.000E+00 2246 1.000% Escherichia coli IMGVR PF02086 PF00145 PF14528 PF13403 phrog_16528 phrog_56 phrog_23296 phrog_36001 phrog_23217 phrog_26324 phrog_363 phrog_28563 phrog_13621 phrog_8411 phrog_38038 phrog_17284
uvig_218132_9 97.800 0.000E+00 2087 0.924% GPD PF02086 PF00145 PF14528 phrog_16528 phrog_56 phrog_23296 phrog_36001 phrog_23217 phrog_26324 phrog_363 phrog_28563 phrog_13621 phrog_8411 phrog_38038 phrog_17284
IMGVR_UViG_2617271050_000001|2617271050|2618618264 97.200 0.000E+00 2244 1.000% Escherichia coli IMGVR PF02086 PF00145 PF14528 PF13403 phrog_16528 phrog_56 phrog_23296 phrog_36001 phrog_23217 phrog_26324 phrog_363 phrog_28563 phrog_13621 phrog_38038 phrog_17284
MH160767_00056 100.000 0.000E+00 2292 1.000% Escherichia phage vB_EcoM-Ro157c2YLVW Escherichia INPHARED PF02086 PF00145 PF14528 PF13403 PF02086 PF00145 PF14528 PF13403 phrog_16528 phrog_16528 phrog_56 phrog_56 phrog_23296 phrog_23296 phrog_36001 phrog_36001 phrog_23217 phrog_23217 phrog_26324 phrog_26324 phrog_363 phrog_363 phrog_28563 phrog_28563 phrog_38038 phrog_38038 phrog_17284 phrog_17284
FO818745_00072 98.200 0.000E+00 2268 1.000% Escherichia phage RCS47 Escherichia INPHARED PF02086 PF00145 PF14528 PF13403 phrog_16528 phrog_56 phrog_23296 phrog_36001 phrog_23217 phrog_26324 phrog_363 phrog_28563 phrog_13621 phrog_8411 phrog_38038 phrog_17284
IMGVR_UViG_2713896898_000005|2713896898|2714781816 95.000 0.000E+00 2185 1.000% Escherichia albertii IMGVR PF02086 PF00145 PF13403 PF14528 phrog_16528 phrog_56 phrog_23296 phrog_36001 phrog_23217 phrog_26324 phrog_363 phrog_28563 phrog_13621 phrog_38038 phrog_17284
uvig_135840_2 97.600 0.000E+00 2253 1.000% GPD PF02086 PF00145 PF14528 PF13403 phrog_16528 phrog_56 phrog_23296 phrog_36001 phrog_23217 phrog_26324 phrog_363 phrog_28563 phrog_13621 phrog_8411 phrog_38038 phrog_17284
IMGVR_UViG_2660238683_000004|2660238683|2663370128 97.400 0.000E+00 2249 1.000% Escherichia coli IMGVR PF02086 PF00145 PF14528 PF13403 phrog_16528 phrog_23296 phrog_36001 phrog_23217 phrog_26324 phrog_363 phrog_28563 phrog_13621 phrog_8411 phrog_38038 phrog_17284
IMGVR_UViG_2713896908_000007|2713896908|2714829630 95.200 0.000E+00 2190 1.000% Escherichia albertii IMGVR PF02086 PF00145 PF14528 PF13403 phrog_16528 phrog_56 phrog_23296 phrog_36001 phrog_23217 phrog_26324 phrog_363 phrog_28563 phrog_13621 phrog_38038 phrog_17284
IMGVR_UViG_2636416131_000001|2636416131|2639457487 97.900 0.000E+00 2260 1.000% Escherichia coli IMGVR PF02086 PF00145 PF14528 PF13403 phrog_16528 phrog_56 phrog_23296 phrog_36001 phrog_23217 phrog_26324 phrog_363 phrog_28563 phrog_13621 phrog_38038 phrog_17284
IMGVR_UViG_2778261639_000006|2778261639|2780839658 97.400 0.000E+00 2224 0.990% Escherichia coli IMGVR PF02086 PF00145 PF14528 PF13403 phrog_16528 phrog_56 phrog_23296 phrog_36001 phrog_23217 phrog_26324 phrog_363 phrog_28563 phrog_13621 phrog_8411 phrog_38038 phrog_17284
IMGVR_UViG_2713896909_000009|2713896909|2714832992 95.100 0.000E+00 2189 1.000% Escherichia albertii IMGVR PF02086 PF00145 PF13403 PF14528 phrog_16528 phrog_56 phrog_23296 phrog_36001 phrog_23217 phrog_26324 phrog_363 phrog_28563 phrog_13621 phrog_38038 phrog_17284
IMGVR_UViG_2648501802_000002|2648501802|2651325535 97.700 0.000E+00 2257 1.000% Escherichia coli IMGVR PF02086 PF00145 PF14528 PF13403 phrog_16528 phrog_56 phrog_23296 phrog_36001 phrog_23217 phrog_26324 phrog_363 phrog_28563 phrog_13621 phrog_8411 phrog_38038 phrog_17284