| APIS family ID | APIS162 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN044 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | ||||||||||||||
| Phrog | phrog_6408 | |||||||||||||
| Host taxa | ;;;;;; | |||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending TIR-STING because it belongs to the same clan as family APIS150 which has seed protein. | |||||||||||||
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP000202296393.pdb | 54 | 142 | 1 | 80 | 0.7775 | 0.6077 |
| Fam ID | Seed protein | Member count | Model | Alignment | APIS162 | IMGVR_UViG_3300017791_000355|3300017791|Ga0188906_106978736 | 3 | HMM model | Member alignment |
|---|
| Member | pident | evalue | bitscore | qcovs | phage | host | SourceDB | Pfam | Phrog |
|---|---|---|---|---|---|---|---|---|---|
| IMGVR_UViG_3300017791_000355|3300017791|Ga0188906_106978736 | 100.000 | 6.907E-97 | 305 | 1.000% | IMGVR | phrog_6408 | |||
| IMGVR_UViG_3300032770_000001|3300032770|Ga0335085_10000040380 | 47.500 | 2.511E-22 | 91 | 0.706% | IMGVR | phrog_6408 | |||
| IMGVR_UViG_3300018089_000001|3300018089|Ga0187774_1000000195 | 40.700 | 9.602E-26 | 100 | 0.965% | IMGVR | phrog_6408 |