| APIS family ID | APIS167 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN052 | |||||||||||||
| Seed protein property |
|
|||||||||||||
| Phage property |
|
|||||||||||||
| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF08719.16 | |||||||||||||
| Phrog | phrog_1017 | |||||||||||||
| Host taxa | d__Eukaryota;p__Arthropoda;c__Insecta;o__Coleoptera;f__Lampyridae;g__Serratia;s__unclassified Serratia species | |||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending toxin-antitoxin (TA) because it belongs to the same clan as family APIS125 which has seed protein. | |||||||||||||
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| AF-O61936-F1-model_v4 | 1 | 186 | 3 | 200 | 0.8799 | 0.8254 |
| AF-A0A0N4UI13-F1-model_v4 | 1 | 184 | 5 | 188 | 0.8533 | 0.816 |
| AF-O16327-F1-model_v4 | 1 | 186 | 3 | 206 | 0.8758 | 0.8101 |
| AF-K0F6K4-F1-model_v4 | 5 | 176 | 19 | 188 | 0.8409 | 0.8036 |
| AF-Q9HVK4-F1-model_v4 | 5 | 170 | 20 | 184 | 0.8573 | 0.8034 |
| AF-Q54TQ0-F1-model_v4 | 4 | 176 | 3 | 153 | 0.8895 | 0.7987 |
| AF-G5EFJ3-F1-model_v4 | 1 | 186 | 3 | 206 | 0.8588 | 0.7975 |
| AF-C0NGJ7-F1-model_v4 | 3 | 173 | 4 | 182 | 0.8282 | 0.791 |
| AF-A0A0N4U3V4-F1-model_v4 | 1 | 186 | 4 | 180 | 0.8322 | 0.768 |
| AF-P30176-F1-model_v4 | 3 | 171 | 11 | 160 | 0.8379 | 0.767 |
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP002759746131.pdb | 1 | 186 | 1 | 185 | 0.9609 | 0.9491 |
| MGYP000520452365.pdb | 1 | 176 | 1 | 166 | 0.9614 | 0.9027 |
| MGYP001795710425.pdb | 1 | 180 | 1 | 166 | 0.9624 | 0.902 |
| MGYP003876978335.pdb | 1 | 172 | 1 | 165 | 0.9646 | 0.9013 |
| MGYP000699912108.pdb | 1 | 173 | 1 | 162 | 0.9697 | 0.9003 |
| MGYP000526634297.pdb | 1 | 172 | 1 | 161 | 0.9709 | 0.8986 |
| MGYP000715145922.pdb | 1 | 173 | 1 | 171 | 0.9408 | 0.8982 |
| MGYP003609360230.pdb | 1 | 171 | 1 | 161 | 0.9698 | 0.8976 |
| MGYP000475127466.pdb | 1 | 180 | 1 | 167 | 0.9545 | 0.8972 |
| MGYP000723881852.pdb | 1 | 177 | 2 | 165 | 0.9571 | 0.8963 |
| Fam ID | Seed protein | Member count | Model | Alignment | APIS167 | ON287374_00122 | 175 | HMM model | Member alignment |
|---|
