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Seed proteins  | Seed protein 3D structures  |  Structural homologs  |  Family infomation  | Homology to other families  | Family members, sources, and their hosts  

Seed protein information help

APIS family ID APIS173
Inhibited defense system
CLAN ID CLAN038
Seed protein property
Accession ID Gene name Protein length Molecular weight Isoelectric point Charge
IMGVR_UViG_3300017971_000595|3300017971|Ga0180438_1000216435
gene_page: 282 32334.73 4.8600 -12.0
Phage property
Phage Assembly id
IMGVR_UViG_3300017971_000595
PMID/References
PDB structures ;
Pfam domains PF09588.15
Phrog
Host taxa ;;;;;;
Gene Location Start: ;  End: ;  Strand: 
Description
Note This family does not have seed protein, but we infer its function is defending CRISPR-Cas evasion by DNA repair because it belongs to the same clan as family APIS185 which has seed protein.

Predicted 3D structure by alphafold2 with pTM = 0.76 Download help

pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;      Download help

Structural homologs

Structure homologs against by afdb (html) ; download full result table

Hit Query start Query end Hit start Hit end TMscore(ali) TMscore(avg)
AF-Q55ES1-F1-model_v4 1 151 17 192 0.7452 0.5797
AF-Q5XVK9-F1-model_v4 2 277 58 265 0.5947 0.5655
AF-Q8GW93-F1-model_v4 1 277 114 317 0.6073 0.5392
AF-C0HGN0-F1-model_v4 1 277 148 353 0.6052 0.5153
AF-A0A0N7KPH9-F1-model_v4 1 277 162 367 0.6055 0.5084
AF-Q8SXR5-F1-model_v4 1 269 255 454 0.5702 0.4582

Structure homologs against by esmdb (html) ; download full result table

Hit Query start Query end Hit start Hit end TMscore(ali) TMscore(avg)
MGYP001327248204.pdb 1 248 6 251 0.9061 0.8337
MGYP001582263125.pdb 1 185 7 189 0.9667 0.7877
MGYP000122276344.pdb 1 188 2 190 0.946 0.7876
MGYP000007684401.pdb 1 193 1 193 0.9519 0.7857
MGYP001612759232.pdb 1 188 1 187 0.9664 0.7854
MGYP001275816148.pdb 1 189 7 194 0.9596 0.7837
MGYP001264630531.pdb 1 178 1 178 0.9581 0.7782
MGYP000308052368.pdb 1 194 5 198 0.9387 0.7715
MGYP003118684967.pdb 1 189 1 182 0.9413 0.7712
MGYP001591426411.pdb 1 186 4 190 0.93 0.7694

Family information      Download help

Fam ID Seed protein Member count Model Alignment
APIS173 IMGVR_UViG_3300017971_000595|3300017971|Ga0180438_1000216435 3 HMM model Member alignment

Host Taxa distribution

Length distribution

Homology to other families       help

Clan ID: CLAN038

APIS173 has no similar APIS family.

Family members, sources, and their hosts        help

Results of representative protein blast against members.
Member pident evalue bitscore qcovs phage host SourceDB Pfam Phrog
IMGVR_UViG_3300017971_000595|3300017971|Ga0180438_1000216435 100.000 4.713E-193 591 1.000% IMGVR PF09588 phrog_
IMGVR_UViG_3300017989_000293|3300017989|Ga0180432_1000184523 94.700 1.805E-183 563 1.000% IMGVR PF09588 phrog_
IMGVR_UViG_3300017963_000635|3300017963|Ga0180437_100025362 40.200 4.451E-57 198 1.000% IMGVR PF09588 phrog_