| APIS family ID | APIS175 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN039 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF07728.19,PF00004.34,PF07726.16,PF13401.11 | |||||||||||||
| Phrog | phrog_249 | |||||||||||||
| Host taxa | ;;;;;; | |||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending restriction-modification (RM) because it belongs to the same clan as family APIS166 which has seed protein. | |||||||||||||
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP003686209621.pdb | 175 | 655 | 1 | 345 | 0.9359 | 0.7129 |
| MGYP001588267429.pdb | 160 | 654 | 5 | 378 | 0.8932 | 0.7021 |
| MGYP003706907671.pdb | 329 | 655 | 10 | 328 | 0.9362 | 0.7012 |
| MGYP001189287878.pdb | 334 | 655 | 1 | 320 | 0.9315 | 0.692 |
| MGYP000089807778.pdb | 336 | 655 | 1 | 309 | 0.9397 | 0.6896 |
| MGYP001269374496.pdb | 329 | 655 | 5 | 328 | 0.9224 | 0.6892 |
| MGYP003663999631.pdb | 327 | 655 | 1 | 307 | 0.9358 | 0.6882 |
| MGYP000487978036.pdb | 334 | 655 | 1 | 318 | 0.9237 | 0.6867 |
| MGYP000605860649.pdb | 330 | 655 | 1 | 317 | 0.926 | 0.6863 |
| MGYP000117001429.pdb | 45 | 654 | 7 | 356 | 0.8865 | 0.6819 |
| Fam ID | Seed protein | Member count | Model | Alignment | APIS175 | IMGVR_UViG_3300020393_000012|3300020393|Ga0211618_100001578 | 6 | HMM model | Member alignment |
|---|
| Member | pident | evalue | bitscore | qcovs | phage | host | SourceDB | Pfam | Phrog |
|---|---|---|---|---|---|---|---|---|---|
| IMGVR_UViG_3300020393_000012|3300020393|Ga0211618_100001578 | 100.000 | 0.000E+00 | 1352 | 1.000% | IMGVR | PF07728 PF00004 PF07726 PF13401 | phrog_249 | ||
| IMGVR_UViG_3300020433_000890|3300020433|Ga0211565_100023963 | 64.100 | 1.158E-267 | 827 | 1.000% | IMGVR | PF07728 PF00004 | phrog_ | ||
| IMGVR_UViG_3300006793_004518|3300006793|Ga0098055_100059521 | 44.400 | 1.355E-167 | 537 | 0.991% | IMGVR | PF07728 PF00004 PF20030 | phrog_249 | ||
| IMGVR_UViG_3300033183_000090|3300033183|Ga0369902_1547526 | 40.900 | 3.118E-140 | 457 | 0.982% | IMGVR | PF07728 PF00004 PF07726 PF13671 | phrog_ | ||
| IMGVR_UViG_3300025138_000258|3300025138|Ga0209634_100059629 | 53.700 | 1.194E-118 | 394 | 0.577% | IMGVR | PF07728 PF20030 PF07726 PF00004 | phrog_ | ||
| IMGVR_UViG_3300025608_000605|3300025608|Ga0209654_10009947 | 37.600 | 8.384E-121 | 400 | 0.969% | IMGVR | PF07728 | phrog_ |