| APIS family ID | APIS176 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN003 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF07275.16 | |||||||||||||
| Phrog | ||||||||||||||
| Host taxa | d__Bacteria;p__Thermodesulfobacteriota;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Desulfovibrio;s__unclassified Desulfovibrio species | |||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending restriction-modification (RM) because it belongs to the same clan as family APIS003,ardu which has seed protein. | |||||||||||||
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| AF-A0A132ZEK5-F1-model_v4 | 2 | 177 | 1 | 167 | 0.8302 | 0.777 |
| AF-A0A132P918-F1-model_v4 | 2 | 177 | 1 | 166 | 0.8224 | 0.7663 |
| AF-A0A0H3GZQ3-F1-model_v4 | 1 | 176 | 4 | 168 | 0.7837 | 0.7271 |
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP000295163498.pdb | 1 | 177 | 1 | 177 | 0.9377 | 0.9237 |
| MGYP001086203328.pdb | 1 | 177 | 7 | 191 | 0.9264 | 0.8752 |
| MGYP001404333992.pdb | 1 | 177 | 1 | 176 | 0.8865 | 0.8637 |
| MGYP001054769952.pdb | 2 | 177 | 1 | 168 | 0.8898 | 0.8469 |
| MGYP003298723900.pdb | 1 | 176 | 1 | 170 | 0.8817 | 0.8415 |
| MGYP003336521335.pdb | 1 | 177 | 1 | 171 | 0.8763 | 0.8386 |
| MGYP003683265247.pdb | 1 | 177 | 1 | 172 | 0.8721 | 0.8373 |
| MGYP003351033418.pdb | 4 | 177 | 1 | 160 | 0.8959 | 0.8323 |
| MGYP001156219726.pdb | 2 | 177 | 1 | 168 | 0.8754 | 0.8294 |
| MGYP001155694885.pdb | 1 | 177 | 7 | 177 | 0.8497 | 0.8288 |
| Fam ID | Seed protein | Member count | Model | Alignment | APIS176 | MZ666938_00004 | 60 | HMM model | Member alignment |
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