| APIS family ID | APIS177 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN038 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF09588.15 | |||||||||||||
| Phrog | ||||||||||||||
| Host taxa | ;;;;;; | |||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending CRISPR-Cas evasion by DNA repair because it belongs to the same clan as family APIS185 which has seed protein. | |||||||||||||
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| AF-A0A0H3GNV3-F1-model_v4 | 1 | 259 | 6 | 206 | 0.7857 | 0.6661 |
| AF-Q32GM8-F1-model_v4 | 1 | 259 | 17 | 218 | 0.7155 | 0.6266 |
| AF-Q8SXR5-F1-model_v4 | 1 | 265 | 256 | 455 | 0.5748 | 0.4532 |
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP001327248204.pdb | 1 | 278 | 6 | 251 | 0.8864 | 0.8154 |
| MGYP001636525833.pdb | 1 | 284 | 12 | 297 | 0.8322 | 0.802 |
| MGYP000122276344.pdb | 1 | 190 | 2 | 189 | 0.9423 | 0.7778 |
| MGYP001264630531.pdb | 1 | 181 | 1 | 178 | 0.949 | 0.7636 |
| MGYP001275816148.pdb | 1 | 192 | 7 | 194 | 0.924 | 0.7629 |
| MGYP001591426411.pdb | 1 | 189 | 4 | 190 | 0.9193 | 0.7569 |
| MGYP001612759232.pdb | 1 | 191 | 1 | 187 | 0.9267 | 0.7565 |
| MGYP000949937690.pdb | 1 | 179 | 2 | 178 | 0.9383 | 0.7542 |
| MGYP001485573207.pdb | 1 | 191 | 1 | 190 | 0.9307 | 0.7528 |
| MGYP003118684967.pdb | 1 | 191 | 1 | 181 | 0.9239 | 0.7496 |
| Fam ID | Seed protein | Member count | Model | Alignment | APIS177 | IMGVR_UViG_3300032046_000145|3300032046|Ga0315289_1000213119 | 11 | HMM model | Member alignment |
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