| APIS family ID | APIS181 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN041 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | ||||||||||||||
| Phrog | ||||||||||||||
| Host taxa | d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Carnobacterium;s__Carnobacterium maltaromaticum | |||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending SOS response because it belongs to the same clan as family APIS132 which has seed protein. | |||||||||||||
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP001593591530.pdb | 1 | 154 | 2 | 152 | 0.9324 | 0.9139 |
| MGYP003297889933.pdb | 2 | 154 | 1 | 150 | 0.933 | 0.9091 |
| MGYP001061041241.pdb | 1 | 153 | 1 | 154 | 0.9263 | 0.9069 |
| MGYP000624096806.pdb | 1 | 154 | 1 | 151 | 0.9273 | 0.9044 |
| MGYP000593100459.pdb | 1 | 154 | 1 | 153 | 0.9209 | 0.904 |
| MGYP001078594949.pdb | 2 | 154 | 1 | 151 | 0.9236 | 0.9022 |
| MGYP000857877464.pdb | 2 | 154 | 1 | 153 | 0.9182 | 0.8992 |
| MGYP000256199055.pdb | 2 | 154 | 1 | 149 | 0.9274 | 0.8989 |
| MGYP000339186829.pdb | 1 | 154 | 1 | 153 | 0.9155 | 0.8961 |
| MGYP001078031973.pdb | 2 | 154 | 3 | 152 | 0.9149 | 0.8957 |
| Fam ID | Seed protein | Member count | Model | Alignment | APIS181 | IMGVR_UViG_2700989269_000001|2700989269|2701970894 | 3 | HMM model | Member alignment |
|---|
| Member | pident | evalue | bitscore | qcovs | phage | host | SourceDB | Pfam | Phrog |
|---|---|---|---|---|---|---|---|---|---|
| IMGVR_UViG_2700989269_000001|2700989269|2701970894 | 100.000 | 3.996E-99 | 312 | 1.000% | Carnobacterium maltaromaticum | IMGVR | phrog_ | ||
| IMGVR_UViG_2839131377_000001|2839131377|2839133786 | 95.400 | 1.412E-98 | 311 | 1.000% | Carnobacterium maltaromaticum | IMGVR | phrog_ | ||
| IMGVR_UViG_2540341076_000004|2540341076|2540561525 | 93.800 | 1.173E-96 | 305 | 1.000% | Carnobacterium maltaromaticum | IMGVR | phrog_ |