| APIS family ID | APIS182 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN039 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF07728.19,PF08406.15,PF00004.34 | |||||||||||||
| Phrog | phrog_249 | |||||||||||||
| Host taxa | ;;;;;; | |||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending restriction-modification (RM) because it belongs to the same clan as family APIS166 which has seed protein. | |||||||||||||
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| AF-A0A0H3H502-F1-model_v4 | 7 | 321 | 1 | 281 | 0.9157 | 0.828 |
| AF-Q2G2J8-F1-model_v4 | 37 | 317 | 1 | 263 | 0.897 | 0.7888 |
| AF-Q51481-F1-model_v4 | 30 | 321 | 1 | 260 | 0.8769 | 0.7634 |
| AF-O53705-F1-model_v4 | 8 | 321 | 1 | 297 | 0.7788 | 0.7181 |
| AF-K0FAA2-F1-model_v4 | 6 | 334 | 1 | 293 | 0.7858 | 0.7173 |
| AF-X8F327-F1-model_v4 | 6 | 324 | 5 | 289 | 0.7839 | 0.7129 |
| AF-P71922-F1-model_v4 | 6 | 324 | 7 | 291 | 0.7801 | 0.7113 |
| AF-P33348-F1-model_v4 | 5 | 327 | 25 | 361 | 0.7472 | 0.7079 |
| AF-K0EW51-F1-model_v4 | 7 | 324 | 9 | 294 | 0.771 | 0.7065 |
| AF-K0EYL3-F1-model_v4 | 5 | 328 | 36 | 364 | 0.7324 | 0.6888 |
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP001163240863.pdb | 3 | 323 | 1 | 317 | 0.9481 | 0.9091 |
| MGYP001777638668.pdb | 4 | 318 | 1 | 312 | 0.9451 | 0.9006 |
| MGYP001777979649.pdb | 4 | 320 | 1 | 314 | 0.9406 | 0.8969 |
| MGYP000300022970.pdb | 5 | 321 | 1 | 309 | 0.9466 | 0.8963 |
| MGYP000056334911.pdb | 2 | 328 | 2 | 321 | 0.9305 | 0.8956 |
| MGYP001557083938.pdb | 4 | 326 | 1 | 317 | 0.9337 | 0.8942 |
| MGYP000089807778.pdb | 5 | 318 | 1 | 309 | 0.9439 | 0.8938 |
| MGYP000942792073.pdb | 1 | 329 | 6 | 325 | 0.921 | 0.8932 |
| MGYP001389673498.pdb | 1 | 325 | 2 | 330 | 0.9136 | 0.8923 |
| MGYP000921253006.pdb | 4 | 318 | 1 | 314 | 0.9345 | 0.8923 |
| Fam ID | Seed protein | Member count | Model | Alignment | APIS182 | MGV-GENOME-0337501_69 | 80 | HMM model | Member alignment |
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