| APIS family ID | APIS186 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN039 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF07728.19 | |||||||||||||
| Phrog | ||||||||||||||
| Host taxa | ;;;;;; | |||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending restriction-modification (RM) because it belongs to the same clan as family APIS166 which has seed protein. | |||||||||||||
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP001588447896.pdb | 326 | 638 | 2 | 311 | 0.9473 | 0.7017 |
| MGYP003686209621.pdb | 297 | 633 | 6 | 345 | 0.917 | 0.7015 |
| MGYP003706907671.pdb | 311 | 633 | 10 | 328 | 0.9358 | 0.6995 |
| MGYP000089807778.pdb | 308 | 632 | 1 | 309 | 0.9378 | 0.6928 |
| MGYP000494590347.pdb | 334 | 636 | 1 | 303 | 0.943 | 0.6923 |
| MGYP003663999631.pdb | 26 | 636 | 1 | 311 | 0.9321 | 0.6898 |
| MGYP001777638668.pdb | 309 | 632 | 1 | 312 | 0.9295 | 0.6892 |
| MGYP000605860649.pdb | 310 | 635 | 1 | 319 | 0.9232 | 0.6891 |
| MGYP000487978036.pdb | 309 | 638 | 1 | 321 | 0.9203 | 0.6888 |
| MGYP001269374496.pdb | 311 | 638 | 4 | 332 | 0.9085 | 0.6871 |
| Fam ID | Seed protein | Member count | Model | Alignment | APIS186 | IMGVR_UViG_3300013126_000333|3300013126|Ga0172367_100037124 | 9 | HMM model | Member alignment |
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