| APIS family ID | APIS187 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN003 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF07275.16 | |||||||||||||
| Phrog | ||||||||||||||
| Host taxa | ;;;;;; | |||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending restriction-modification (RM) because it belongs to the same clan as family APIS003,ardu which has seed protein. | |||||||||||||
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| AF-A0A0H3GZQ3-F1-model_v4 | 1 | 173 | 7 | 168 | 0.8025 | 0.7582 |
| AF-A0A132P918-F1-model_v4 | 1 | 173 | 3 | 166 | 0.7647 | 0.7081 |
| AF-A0A132ZEK5-F1-model_v4 | 1 | 174 | 3 | 167 | 0.7608 | 0.7054 |
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP001270281358.pdb | 1 | 174 | 1 | 172 | 0.8604 | 0.8251 |
| MGYP000526673471.pdb | 1 | 173 | 11 | 176 | 0.8508 | 0.8133 |
| MGYP001612770019.pdb | 1 | 174 | 19 | 189 | 0.8607 | 0.8016 |
| MGYP001046317417.pdb | 1 | 174 | 5 | 173 | 0.8371 | 0.8012 |
| MGYP003145215081.pdb | 1 | 174 | 8 | 174 | 0.826 | 0.7974 |
| MGYP001406834378.pdb | 1 | 174 | 1 | 188 | 0.8604 | 0.7968 |
| MGYP000918170002.pdb | 1 | 174 | 4 | 177 | 0.8305 | 0.7944 |
| MGYP003639420651.pdb | 1 | 174 | 8 | 168 | 0.8339 | 0.794 |
| MGYP000754008134.pdb | 1 | 174 | 4 | 176 | 0.8319 | 0.7939 |
| MGYP000220208597.pdb | 1 | 173 | 19 | 193 | 0.8545 | 0.7912 |
| Fam ID | Seed protein | Member count | Model | Alignment | APIS187 | IMGVR_UViG_3300020000_000092|3300020000|Ga0193692_100022025 | 4 | HMM model | Member alignment |
|---|
| Member | pident | evalue | bitscore | qcovs | phage | host | SourceDB | Pfam | Phrog |
|---|---|---|---|---|---|---|---|---|---|
| IMGVR_UViG_3300020000_000092|3300020000|Ga0193692_100022025 | 100.000 | 5.408E-119 | 371 | 1.000% | IMGVR | PF07275 | phrog_ | ||
| IMGVR_UViG_3300014059_000030|3300014059|Ga0119868_100013944 | 58.600 | 6.910E-58 | 195 | 0.977% | IMGVR | PF07275 | phrog_ | ||
| IMGVR_UViG_3300031787_000638|3300031787|Ga0315900_1000241315 | 35.100 | 2.281E-25 | 101 | 0.983% | IMGVR | PF07275 | phrog_ | ||
| IMGVR_UViG_3300037470_000589|3300037470|Ga0395804_0000918_20202_20723 | 54.300 | 2.832E-52 | 179 | 0.983% | IMGVR | PF07275 | phrog_ |