| APIS family ID | APIS188 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN038 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF09588.15 | |||||||||||||
| Phrog | ||||||||||||||
| Host taxa | ;;;;;; | |||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending CRISPR-Cas evasion by DNA repair because it belongs to the same clan as family APIS185 which has seed protein. | |||||||||||||
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| AF-Q32GM8-F1-model_v4 | 1 | 273 | 1 | 223 | 0.7452 | 0.6445 |
| AF-K7K9X8-F1-model_v4 | 8 | 288 | 21 | 223 | 0.6379 | 0.5927 |
| AF-Q5XVK9-F1-model_v4 | 8 | 288 | 57 | 263 | 0.5735 | 0.556 |
| AF-Q8GW93-F1-model_v4 | 1 | 286 | 41 | 316 | 0.5892 | 0.5324 |
| AF-C0HGN0-F1-model_v4 | 3 | 286 | 144 | 352 | 0.5838 | 0.5064 |
| AF-A0A0N7KPH9-F1-model_v4 | 3 | 285 | 158 | 366 | 0.5827 | 0.4984 |
| AF-Q8SXR5-F1-model_v4 | 1 | 277 | 244 | 453 | 0.5674 | 0.4609 |
| AF-Q4DEY6-F1-model_v4 | 6 | 198 | 2 | 251 | 0.6304 | 0.4521 |
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP001327248204.pdb | 1 | 257 | 1 | 251 | 0.9021 | 0.8198 |
| MGYP001582263125.pdb | 1 | 195 | 1 | 189 | 0.9484 | 0.772 |
| MGYP001275816148.pdb | 1 | 197 | 2 | 192 | 0.9358 | 0.7715 |
| MGYP000308052368.pdb | 2 | 205 | 1 | 201 | 0.9141 | 0.7689 |
| MGYP000007684401.pdb | 6 | 204 | 1 | 196 | 0.9221 | 0.768 |
| MGYP003406017781.pdb | 1 | 269 | 1 | 189 | 0.9415 | 0.7663 |
| MGYP001591426411.pdb | 3 | 196 | 1 | 190 | 0.9385 | 0.7649 |
| MGYP003456770483.pdb | 1 | 188 | 1 | 181 | 0.9533 | 0.7634 |
| MGYP003655438028.pdb | 1 | 196 | 1 | 192 | 0.9326 | 0.7633 |
| MGYP000205446686.pdb | 1 | 195 | 7 | 194 | 0.9275 | 0.7633 |
| Fam ID | Seed protein | Member count | Model | Alignment | APIS188 | IMGVR_UViG_3300017963_006746|3300017963|Ga0180437_1000514718 | 13 | HMM model | Member alignment |
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