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Seed proteins  | Seed protein 3D structures  |  Structural homologs  |  Family infomation  | Homology to other families  | Family members, sources, and their hosts  

Seed protein information help

APIS family ID APIS190
Inhibited defense system
CLAN ID CLAN039
Seed protein property
Accession ID Gene name Protein length Molecular weight Isoelectric point Charge
IMGVR_UViG_3300043908_003701|3300043908|Ga0466286_000809_5255_7327
gene_page: 690 77570.12 5.2392 -11.5
Phage property
Phage Assembly id
IMGVR_UViG_3300043908_003701
PMID/References
PDB structures ;
Pfam domains PF07728.19,PF00004.34,PF07726.16,PF08406.15,PF13401.11
Phrog phrog_249
Host taxa ;;;;;;
Gene Location Start: ;  End: ;  Strand: 
Description
Note This family does not have seed protein, but we infer its function is defending restriction-modification (RM) because it belongs to the same clan as family APIS166 which has seed protein.

Predicted 3D structure by alphafold2 with pTM = 0.54 Download help

pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;      Download help

Structural homologs

No homologs found in AlphaFold database

Structure homologs against by esmdb (html) ; download full result table

Hit Query start Query end Hit start Hit end TMscore(ali) TMscore(avg)
MGYP003686209621.pdb 323 677 1 345 0.948 0.7097
MGYP001269374496.pdb 349 687 3 332 0.9366 0.692
MGYP001189287878.pdb 357 683 1 324 0.933 0.6874
MGYP000091352304.pdb 344 686 7 348 0.897 0.6729
MGYP001588267429.pdb 170 677 3 378 0.8692 0.6705
MGYP003376661277.pdb 213 684 1 345 0.8881 0.6666
MGYP003122295038.pdb 345 679 27 357 0.9247 0.6508
MGYP002735213195.pdb 192 680 1 356 0.8603 0.6504
MGYP000117001429.pdb 58 676 6 356 0.8566 0.6468
MGYP002641684555.pdb 35 677 1 415 0.8074 0.6446

Family information      Download help

Fam ID Seed protein Member count Model Alignment
APIS190 IMGVR_UViG_3300043908_003701|3300043908|Ga0466286_000809_5255_7327 6 HMM model Member alignment

Host Taxa distribution

Length distribution

Homology to other families       help

Clan ID: CLAN039

APIS190 has no similar APIS family.

Family members, sources, and their hosts        help

Results of representative protein blast against members.
Member pident evalue bitscore qcovs phage host SourceDB Pfam Phrog
IMGVR_UViG_3300043908_003701|3300043908|Ga0466286_000809_5255_7327 100.000 0.000E+00 1382 1.000% IMGVR PF07728 PF00004 PF07726 PF08406 PF13401 phrog_249
IMGVR_UViG_3300009703_000110|3300009703|Ga0114933_1000178521 83.200 0.000E+00 1195 1.000% IMGVR PF07728 PF00004 PF07726 PF08406 PF13401 PF13671 phrog_249
IMGVR_UViG_3300030098_002345|3300030098|Ga0183663_100039633 92.200 0.000E+00 1332 1.000% IMGVR PF07728 PF00004 PF07726 PF08406 PF13401 phrog_249
IMGVR_UViG_3300030117_003990|3300030117|Ga0183722_10012287 94.700 0.000E+00 1374 1.000% IMGVR PF07728 PF00004 PF07726 PF08406 PF13401 phrog_249
IMGVR_UViG_3300030118_002027|3300030118|Ga0183723_100023132 91.000 0.000E+00 1312 1.000% IMGVR PF07728 PF00004 PF07726 PF08406 PF13401 phrog_249
IMGVR_UViG_3300021197_001215|3300021197|Ga0219031_1105912 42.200 8.237E-153 496 0.971% IMGVR PF07728 PF07726 PF00004 phrog_