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Seed proteins  | Seed protein 3D structures  |  Structural homologs  |  Family infomation  | Homology to other families  | Family members, sources, and their hosts  

Seed protein information help

APIS family ID APIS191
Inhibited defense system
CLAN ID CLAN037
Seed protein property
Accession ID Gene name Protein length Molecular weight Isoelectric point Charge
IMGVR_UViG_2877594009_000001|2877594009|2877597981
gene_page: 189 21627.66 6.3349 -0.5
Phage property
Phage Assembly id
IMGVR_UViG_2877594009_000001
PMID/References
PDB structures ;
Pfam domains
Phrog phrog_849,phrog_14043
Host taxa d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter baumannii
Gene Location Start: ;  End: ;  Strand: 
Description
Note This family does not have seed protein, but we infer its function is defending Retron because it belongs to the same clan as family APIS094 which has seed protein.

Predicted 3D structure by alphafold2 with pTM = 0.85 Download help

pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;      Download help

Structural homologs

Structure homologs against by afdb (html) ; download full result table

Hit Query start Query end Hit start Hit end TMscore(ali) TMscore(avg)
AF-P07362-F1-model_v4 12 189 133 364 0.7596 0.4976
AF-A0A0H3GVT7-F1-model_v4 12 189 132 364 0.7583 0.4969
AF-Q32BQ1-F1-model_v4 12 189 132 364 0.7583 0.4968
AF-Q08346-F1-model_v4 12 189 133 365 0.7612 0.4963
AF-Q9PM37-F1-model_v4 12 189 121 350 0.754 0.4887

Structure homologs against by esmdb (html) ; download full result table

Hit Query start Query end Hit start Hit end TMscore(ali) TMscore(avg)
MGYP003945228509.pdb 15 189 1 172 0.9371 0.8894
MGYP000682962050.pdb 18 189 1 173 0.9357 0.8855
MGYP002648059426.pdb 17 185 1 171 0.938 0.8846
MGYP000550666186.pdb 16 189 1 175 0.9112 0.8653
MGYP003451470354.pdb 15 189 1 174 0.9187 0.8635
MGYP000411629796.pdb 15 188 1 172 0.9117 0.8576
MGYP000680009746.pdb 14 188 1 172 0.9108 0.8563
MGYP000909425859.pdb 11 189 1 172 0.9065 0.8541
MGYP003650345132.pdb 11 189 1 172 0.8989 0.8529
MGYP000155127275.pdb 19 189 1 165 0.9226 0.8506

Family information      Download help

Fam ID Seed protein Member count Model Alignment
APIS191 IMGVR_UViG_2877594009_000001|2877594009|2877597981 6 HMM model Member alignment

Host Taxa distribution

Length distribution

Homology to other families       help

Clan ID: CLAN037

APIS191 has no similar APIS family.

Family members, sources, and their hosts        help

Results of representative protein blast against members.
Member pident evalue bitscore qcovs phage host SourceDB Pfam Phrog
IMGVR_UViG_2877594009_000001|2877594009|2877597981 100.000 5.334E-128 398 1.000% Acinetobacter baumannii IMGVR phrog_14043 phrog_849
IMGVR_UViG_3300036466_000103|3300036466|Ga0377201_000018_76981_77502 57.800 1.091E-55 189 0.889% IMGVR phrog_17952
IMGVR_UViG_2864804954_000001|2864804954|2864806738 61.600 2.004E-58 197 0.857% Acinetobacter johnsonii IMGVR phrog_
IMGVR_UViG_3300048904_000041|3300048904|Ga0496101_0000085_18877_19413 58.100 4.241E-56 190 0.889% IMGVR phrog_17952 phrog_849
IMGVR_UViG_3300027747_001395|3300027747|Ga0209189_1000012216 46.300 9.543E-39 140 0.862% IMGVR phrog_
IMGVR_UViG_3300010334_000029|3300010334|Ga0136644_10000013110 46.300 9.543E-39 140 0.862% IMGVR phrog_