| APIS family ID | APIS196 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN038 | |||||||||||||
| Seed protein property |
|
|||||||||||||
| Phage property |
|
|||||||||||||
| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF09588.15 | |||||||||||||
| Phrog | ||||||||||||||
| Host taxa | ;;;;;; | |||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending CRISPR-Cas evasion by DNA repair because it belongs to the same clan as family APIS185 which has seed protein. | |||||||||||||
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| AF-C0HGN0-F1-model_v4 | 2 | 196 | 144 | 351 | 0.7573 | 0.5106 |
| AF-A0A1D6E7X0-F1-model_v4 | 1 | 196 | 142 | 353 | 0.7455 | 0.5106 |
| AF-A0A0N7KPH9-F1-model_v4 | 2 | 196 | 158 | 365 | 0.7546 | 0.5019 |
| AF-Q8SXR5-F1-model_v4 | 1 | 273 | 244 | 455 | 0.5918 | 0.4726 |
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP000712455893.pdb | 1 | 186 | 2 | 183 | 0.9527 | 0.7865 |
| MGYP000555834340.pdb | 1 | 182 | 2 | 181 | 0.9408 | 0.773 |
| MGYP002664370176.pdb | 1 | 189 | 3 | 189 | 0.921 | 0.7721 |
| MGYP000508973085.pdb | 1 | 192 | 1 | 186 | 0.9019 | 0.7581 |
| MGYP000653313854.pdb | 1 | 189 | 4 | 190 | 0.9121 | 0.7555 |
| MGYP001149395728.pdb | 1 | 194 | 3 | 197 | 0.8877 | 0.7535 |
| MGYP001618736178.pdb | 1 | 185 | 3 | 183 | 0.9145 | 0.7527 |
| MGYP000856007455.pdb | 15 | 185 | 1 | 169 | 0.9394 | 0.7506 |
| MGYP000205446686.pdb | 1 | 188 | 7 | 192 | 0.8863 | 0.7474 |
| MGYP003382733139.pdb | 1 | 189 | 3 | 189 | 0.912 | 0.747 |
| Fam ID | Seed protein | Member count | Model | Alignment | APIS196 | IMGVR_UViG_3300000385_000390|3300000385|PR_CR_10_Liq_1_inCRDRAFT_10071824 | 5 | HMM model | Member alignment |
|---|
| Member | pident | evalue | bitscore | qcovs | phage | host | SourceDB | Pfam | Phrog |
|---|---|---|---|---|---|---|---|---|---|
| IMGVR_UViG_3300000385_000390|3300000385|PR_CR_10_Liq_1_inCRDRAFT_10071824 | 100.000 | 1.596E-185 | 569 | 1.000% | IMGVR | PF09588 | phrog_ | ||
| IMGVR_UViG_3300017578_000041|3300017578|Ga0187341_10000561 | 83.900 | 3.535E-154 | 479 | 0.975% | IMGVR | PF09588 | phrog_ | ||
| IMGVR_UViG_3300005192_000021|3300005192|Ga0073159_10000969 | 84.800 | 8.654E-160 | 495 | 0.996% | IMGVR | PF09588 | phrog_ | ||
| IMGVR_UViG_3300026094_000155|3300026094|Ga0209937_100073619 | 94.300 | 1.087E-181 | 558 | 0.996% | IMGVR | PF09588 | phrog_ | ||
| IMGVR_UViG_3300022699_000064|3300022699|Ga0248667_10108818 | 94.800 | 6.370E-183 | 561 | 0.996% | IMGVR | PF09588 | phrog_ |