APIS family ID | APIS197 | |||||||||||||
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Inhibited defense system | NAD+ reconstitution pathway (NARP) | |||||||||||||
CLAN ID | CLAN043 | |||||||||||||
Seed protein property |
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Phage property |
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PMID/References | Osterman et al., 2024 | |||||||||||||
PDB structures | ; | |||||||||||||
Pfam domains | PF04095.21,PF18127.6,PF04095.21,PF18127.6 | |||||||||||||
Phrog | phrog_15800,phrog_15800,phrog_448,phrog_448,phrog_12872,phrog_12872,phrog_16547,phrog_16547 | |||||||||||||
Host taxa | d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia; | |||||||||||||
Gene Location | Start: 53673; End: 55454; Strand: + | |||||||||||||
Description | Phage enzyme Nicotinamide ADPR-transferase (Namat) |
Genome accession | Start | End | Strand | Protein ID | Length | Molecular weight | Charge | Isoelectric point | Function | Phrog | PFAM |
---|---|---|---|---|---|---|---|---|---|---|---|
MZ501086.1 | 51308 | 51574 | + | QXV81766.1 | 88 | 9231.99 | 19.0 | 12.3269 | hypothetical protein | phrog_4425 ; phrog_28305 | |
MZ501086.1 | 51577 | 51897 | + | QXV81767.1 | 106 | 12345.30 | 2.0 | 8.2226 | hypothetical protein | phrog_4462 | |
MZ501086.1 | 51948 | 52463 | + | QXV81768.1 | 171 | 20075.70 | 6.5 | 8.6065 | hypothetical protein | phrog_3500 | |
MZ501086.1 | 52456 | 52734 | + | QXV81769.1 | 92 | 10158.67 | -3.0 | 4.7317 | hypothetical protein | phrog_4726 | |
MZ501086.1 | 52746 | 53627 | + | QXV81770.1 | 293 | 32278.87 | -3.0 | 5.8681 | ribose-phosphate pyrophosphokinase | phrog_619 ; phrog_619 ; phrog_16932 ; phrog_16932 | PF00156.32 ;PF14572.11 ;PF00156.32 ;PF14572.11 |
MZ501086.1 | 53673 | 55454 | + | QXV81771.1 | 593 | 66249.35 | -13.5 | 5.0539 | nicotinamide phosphoribosyltransferase | phrog_15800 ; phrog_15800 ; phrog_12872 ; phrog_12872 ; phrog_448 ; phrog_448 ; phrog_16547 ; phrog_16547 | PF04095.21 ;PF18127.6 ;PF04095.21 ;PF18127.6 |
MZ501086.1 | 55508 | 55852 | + | QXV81772.1 | 114 | 13652.48 | -9.5 | 4.2701 | hypothetical protein | phrog_20372 | |
MZ501086.1 | 55858 | 56193 | + | QXV81773.1 | 111 | 12800.97 | 6.0 | 9.5271 | hypothetical protein | phrog_24228 ; phrog_4262 | |
MZ501086.1 | 56175 | 56351 | + | QXV81774.1 | 58 | 6515.67 | 2.5 | 7.9258 | putative membrane protein | phrog_3931 ; phrog_8027 | |
MZ501086.1 | 56380 | 58746 | + | QXV81775.1 | 788 | 89422.92 | 4.0 | 6.9923 | membrane integrity protector | ||
MZ501086.1 | 58826 | 59932 | + | QXV81776.1 | 368 | 41069.41 | 18.0 | 9.9566 | membrane integrity protector | phrog_36818 ; phrog_2886 ; phrog_609 |
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
---|---|---|---|---|---|---|
AF-G4VE80-F1-model_v4 | 3 | 593 | 6 | 470 | 0.9403 | 0.8415 |
AF-E7F8T6-F1-model_v4 | 1 | 593 | 3 | 487 | 0.919 | 0.8375 |
AF-P43490-F1-model_v4 | 2 | 593 | 2 | 484 | 0.9182 | 0.8352 |
AF-Q99KQ4-F1-model_v4 | 2 | 593 | 3 | 484 | 0.9161 | 0.8331 |
AF-Q80Z29-F1-model_v4 | 2 | 593 | 3 | 484 | 0.9159 | 0.8329 |
AF-F1RDZ8-F1-model_v4 | 2 | 593 | 1 | 472 | 0.9006 | 0.8252 |
AF-A0A044T4A9-F1-model_v4 | 3 | 593 | 1 | 466 | 0.8958 | 0.8213 |
AF-A0A0K0DSZ9-F1-model_v4 | 1 | 593 | 1 | 468 | 0.8891 | 0.8196 |
AF-A0A2R8S0I0-F1-model_v4 | 1 | 593 | 1 | 485 | 0.8675 | 0.8128 |
AF-A0A2R8QPL7-F1-model_v4 | 1 | 593 | 4 | 488 | 0.8621 | 0.8099 |
Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
---|---|---|---|---|---|---|
MGYP003190417335.pdb | 1 | 593 | 1 | 589 | 0.9379 | 0.9302 |
MGYP002711899234.pdb | 6 | 592 | 1 | 558 | 0.9448 | 0.9115 |
MGYP000187798448.pdb | 1 | 593 | 14 | 579 | 0.9215 | 0.906 |
MGYP000861496064.pdb | 4 | 593 | 3 | 566 | 0.9318 | 0.9059 |
MGYP000311410512.pdb | 4 | 593 | 2 | 564 | 0.9332 | 0.9051 |
MGYP000204999448.pdb | 4 | 592 | 1 | 559 | 0.9358 | 0.9039 |
MGYP002623727680.pdb | 7 | 593 | 1 | 520 | 0.9653 | 0.9034 |
MGYP001333808917.pdb | 3 | 593 | 1 | 574 | 0.9138 | 0.901 |
MGYP000402814898.pdb | 5 | 593 | 1 | 549 | 0.9357 | 0.8994 |
MGYP003566158624.pdb | 3 | 593 | 1 | 536 | 0.9472 | 0.898 |
Fam ID | Seed protein | Member count | Model | Alignment | APIS197 | QXV81771.1 | 317 | HMM model | Member alignment |
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