| APIS family ID | APIS199 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN038 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF09588.15 | |||||||||||||
| Phrog | ||||||||||||||
| Host taxa | ;;;;;; | |||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending CRISPR-Cas evasion by DNA repair because it belongs to the same clan as family APIS185 which has seed protein. | |||||||||||||
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| AF-Q55ES1-F1-model_v4 | 1 | 158 | 6 | 192 | 0.736 | 0.5959 |
| AF-K7K9X8-F1-model_v4 | 11 | 284 | 21 | 226 | 0.6232 | 0.5854 |
| AF-I1KRY7-F1-model_v4 | 2 | 282 | 61 | 277 | 0.6044 | 0.569 |
| AF-Q8GW93-F1-model_v4 | 1 | 283 | 38 | 316 | 0.6094 | 0.5456 |
| AF-K7M7T4-F1-model_v4 | 11 | 284 | 77 | 282 | 0.571 | 0.5344 |
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP001636525833.pdb | 1 | 267 | 3 | 277 | 0.8812 | 0.8167 |
| MGYP001327248204.pdb | 5 | 257 | 1 | 251 | 0.8726 | 0.7985 |
| MGYP000205446686.pdb | 1 | 192 | 3 | 194 | 0.9522 | 0.7874 |
| MGYP001582263125.pdb | 3 | 192 | 1 | 189 | 0.9553 | 0.7856 |
| MGYP000308052368.pdb | 6 | 201 | 1 | 198 | 0.9509 | 0.7815 |
| MGYP001764809385.pdb | 1 | 273 | 1 | 192 | 0.9436 | 0.7812 |
| MGYP001275816148.pdb | 4 | 196 | 1 | 194 | 0.9428 | 0.7803 |
| MGYP003456770483.pdb | 5 | 185 | 1 | 181 | 0.9638 | 0.7802 |
| MGYP000267747872.pdb | 5 | 188 | 1 | 183 | 0.9597 | 0.7794 |
| MGYP001243124434.pdb | 1 | 188 | 1 | 188 | 0.9497 | 0.7793 |
| Fam ID | Seed protein | Member count | Model | Alignment | APIS199 | IMGVR_UViG_3300009100_000030|3300009100|Ga0075418_1000075726 | 3 | HMM model | Member alignment |
|---|
| Member | pident | evalue | bitscore | qcovs | phage | host | SourceDB | Pfam | Phrog |
|---|---|---|---|---|---|---|---|---|---|
| IMGVR_UViG_3300009100_000030|3300009100|Ga0075418_1000075726 | 100.000 | 7.362E-197 | 602 | 1.000% | IMGVR | PF09588 | phrog_ | ||
| IMGVR_UViG_3300027909_000046|3300027909|Ga0209382_100014732 | 92.200 | 7.645E-181 | 556 | 0.990% | IMGVR | PF09588 | phrog_ | ||
| IMGVR_UViG_3300050508_000213|3300050508|nmdc:mga09592_803_c1_14505_15374 | 98.500 | 5.371E-197 | 602 | 0.997% | IMGVR | PF09588 | phrog_ |