PUL ID

PUL0211

PubMed

25586188, J Biol Chem. 2015 Mar 6;290(10):6022-36. doi: 10.1074/jbc.M114.624593. Epub 2015 Jan 13.
25205095, mBio. 2014 Sep 9;5(5):e01527-14. doi: 10.1128/mBio.01527-14.

Characterization method

enzyme activity assay,gene deletion mutant and growth assay,thin layer chromatography

Genomic accession number

AE008922.1

Nucelotide position range

3414366-3434455

Substrate

N-glycan

Loci

XCC2887-XCC2895

Species

Xanthomonas campestris pv. campestris/340

Degradation or Biosynthesis

degradation

Gene Name

Locus Tag

Protein ID

Gene Position

GenBank Contig Range

EC Number

iroN XCC2887 AAM42159.1 0 - 2742 (+) AE008922.1:3414366-3417108 -
fucA1 XCC2888 AAM42160.1 2944 - 4630 (+) AE008922.1:3417310-3418996 -
- XCC2889 AAM42161.1 4644 - 5706 (+) AE008922.1:3419010-3420072 -
nahA XCC2890 AAM42162.1 5885 - 9158 (+) AE008922.1:3420251-3423524 -
- XCC2891 AAM42163.1 8334 - 11016 (+) AE008922.1:3422700-3425382 -
- XCC2892 AAM42164.1 11277 - 13944 (+) AE008922.1:3425643-3428310 -
- XCC2893 AAM42165.1 14031 - 15549 (+) AE008922.1:3428397-3429915 -
- XCC2894 AAM42166.1 15685 - 18031 (+) AE008922.1:3430051-3432397 -
bga XCC2895 AAM42167.1 18248 - 20090 (+) AE008922.1:3432614-3434456 -

Cluster number

1

Gene name

Gene position

Gene type

Found by CGCFinder?

iroN 1 - 2742 (+) TC: gnl|TC-DB|Q9AAZ6|1.B.14.12.2 Yes
fucA1 2945 - 4630 (+) CAZyme: GH29 Yes
- 4645 - 5706 (+) CAZyme: GH18 Yes
nahA 5886 - 9158 (+) CAZyme: GH20 Yes
- 8335 - 11016 (+) CAZyme: GH2 Yes
- 11278 - 13944 (+) CAZyme: GH3 Yes
- 14032 - 15549 (+) CAZyme: GH125 Yes
- 15686 - 18031 (+) CAZyme: GH92 Yes
bga 18249 - 20090 (+) CAZyme: GH35 Yes

PUL ID

PUL0211

PubMed

25586188, J Biol Chem. 2015 Mar 6;290(10):6022-36. doi: 10.1074/jbc.M114.624593. Epub 2015 Jan 13.

Title

The N-Glycan cluster from Xanthomonas campestris pv. campestris: a toolbox for sequential plant N-glycan processing.

Author

Dupoiron S, Zischek C, Ligat L, Carbonne J, Boulanger A, Duge de Bernonville T, Lautier M, Rival P, Arlat M, Jamet E, Lauber E, Albenne C

Abstract

N-Glycans are widely distributed in living organisms but represent only a small fraction of the carbohydrates found in plants. This probably explains why they have not previously been considered as substrates exploited by phytopathogenic bacteria during plant infection. Xanthomonas campestris pv. campestris, the causal agent of black rot disease of Brassica plants, possesses a specific system for GlcNAc utilization expressed during host plant infection. This system encompasses a cluster of eight genes (nixE to nixL) encoding glycoside hydrolases (GHs). In this paper, we have characterized the enzymatic activities of these GHs and demonstrated their involvement in sequential degradation of a plant N-glycan using a N-glycopeptide containing two GlcNAcs, three mannoses, one fucose, and one xylose (N2M3FX) as a substrate. The removal of the alpha-1,3-mannose by the alpha-mannosidase NixK (GH92) is a prerequisite for the subsequent action of the beta-xylosidase NixI (GH3), which is involved in the cleavage of the beta-1,2-xylose, followed by the alpha-mannosidase NixJ (GH125), which removes the alpha-1,6-mannose. These data, combined to the subcellular localization of the enzymes, allowed us to propose a model of N-glycopeptide processing by X. campestris pv. campestris. This study constitutes the first evidence suggesting N-glycan degradation by a plant pathogen, a feature shared with human pathogenic bacteria. Plant N-glycans should therefore be included in the repertoire of molecules putatively metabolized by phytopathogenic bacteria during their life cycle.

PubMed

25205095, mBio. 2014 Sep 9;5(5):e01527-14. doi: 10.1128/mBio.01527-14.

Title

The plant pathogen Xanthomonas campestris pv. campestris exploits N-acetylglucosamine during infection.

Author

Boulanger A, Zischek C, Lautier M, Jamet S, Rival P, Carrere S, Arlat M, Lauber E

Abstract

N-Acetylglucosamine (GlcNAc), the main component of chitin and a major constituent of bacterial peptidoglycan, is present only in trace amounts in plants, in contrast to the huge amount of various sugars that compose the polysaccharides of the plant cell wall. Thus, GlcNAc has not previously been considered a substrate exploited by phytopathogenic bacteria during plant infection. Xanthomonas campestris pv. campestris, the causal agent of black rot disease of Brassica plants, expresses a carbohydrate utilization system devoted to GlcNAc exploitation. In addition to genes involved in GlcNAc catabolism, this system codes for four TonB-dependent outer membrane transporters (TBDTs) and eight glycoside hydrolases. Expression of all these genes is under the control of GlcNAc. In vitro experiments showed that X. campestris pv. campestris exploits chitooligosaccharides, and there is indirect evidence that during the early stationary phase, X. campestris pv. campestris recycles bacterium-derived peptidoglycan/muropeptides. Results obtained also suggest that during plant infection and during growth in cabbage xylem sap, X. campestris pv. campestris encounters and metabolizes plant-derived GlcNAc-containing molecules. Specific TBDTs seem to be preferentially involved in the consumption of all these plant-, fungus- and bacterium-derived GlcNAc-containing molecules. This is the first evidence of GlcNAc consumption during infection by a phytopathogenic bacterium. Interestingly, N-glycans from plant N-glycosylated proteins are proposed to be substrates for glycoside hydrolases belonging to the X. campestris pv. campestris GlcNAc exploitation system. This observation extends the range of sources of GlcNAc metabolized by phytopathogenic bacteria during their life cycle. IMPORTANCE: Despite the central role of N-acetylglucosamine (GlcNAc) in nature, there is no evidence that phytopathogenic bacteria metabolize this compound during plant infection. Results obtained here suggest that Xanthomonas campestris pv. campestris, the causal agent of black rot disease on Brassica, encounters and metabolizes GlcNAc in planta and in vitro. Active and specific outer membrane transporters belonging to the TonB-dependent transporters family are proposed to import GlcNAc-containing complex molecules from the host, from the bacterium, and/or from the environment, and bacterial glycoside hydrolases induced by GlcNAc participate in their degradation. Our results extend the range of sources of GlcNAc metabolized by this phytopathogenic bacterium during its life cycle to include chitooligosaccharides that could originate from fungi or insects present in the plant environment, muropeptides leached during peptidoglycan recycling and bacterial lysis, and N-glycans from plant N-glycosylated proteins present in the plant cell wall as well as in xylem sap.