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Cite: NAR/gkaa742 2020



PUL General Information

Literature Information

PUL ID

PUL0240

PubMed

24448980, J Ind Microbiol Biotechnol. 2014 Mar;41(3):601-6. doi: 10.1007/s10295-013-1395-y. Epub 2014 Jan 22.

Characterization method

fosmid library screen,sequence homology analysis

Genomic accession number

JX424621

Nucelotide position range

4621-24098

Substrate

cellulose

Loci

AGH14016.1-AGH14025.1

Species

Prevotella sp. Sc00028/1231728

Degradation or Biosynthesis

degradation

Gene Name

Locus Tag

Protein ID

Gene Position

GenBank Contig Range

EC Number

- - AGH14016.1 0 - 2259 (-) JX424621.1:4621-6880 -
- - AGH14017.1 2384 - 3962 (-) JX424621.1:7005-8583 -
- - AGH14018.1 4134 - 5118 (-) JX424621.1:8755-9739 -
- - AGH14019.1 5223 - 7731 (-) JX424621.1:9844-12352 -
- - AGH14020.1 7749 - 9081 (-) JX424621.1:12370-13702 -
- - AGH14021.1 9080 - 10862 (-) JX424621.1:13701-15483 -
- - AGH14022.1 10880 - 14162 (-) JX424621.1:15501-18783 -
- - AGH14023.1 14499 - 16857 (-) JX424621.1:19120-21478 -
- - AGH14024.1 16859 - 17888 (-) JX424621.1:21480-22509 -
- - AGH14025.1 18029 - 19478 (+) JX424621.1:22650-24099 -

Cluster number

1

Gene name

Gene position

Gene type

Found by CGCFinder?

- 1 - 4 (+) CDS No
- 1 - 2259 (-) CAZyme: GH31 Yes
- 2385 - 3962 (-) CAZyme: GH9 Yes
- 4135 - 5118 (-) CAZyme: GH26 Yes
- 5224 - 7731 (-) other Yes
- 7750 - 9081 (-) other Yes
- 9081 - 10862 (-) other Yes
- 10881 - 14162 (-) TC: gnl|TC-DB|Q45780|1.B.14.6.1 Yes
- 14500 - 16857 (-) CDS No
- 16860 - 17888 (-) CDS No
- 18030 - 19478 (+) CDS No

PUL ID

PUL0240

PubMed

24448980, J Ind Microbiol Biotechnol. 2014 Mar;41(3):601-6. doi: 10.1007/s10295-013-1395-y. Epub 2014 Jan 22.

Title

Analysis of the bovine rumen microbiome reveals a diversity of Sus-like polysaccharide utilization loci from the bacterial phylum Bacteroidetes.

Author

Rosewarne CP, Pope PB, Cheung JL, Morrison M

Abstract

Several unique Sus-like polysaccharide utilization loci (PULs) were identified from bacteria resident in bovine rumen microbiomes through functional screening of a fosmid library. The loci were phylogenetically assigned to the genus Prevotella within the phylum Bacteroidetes. These findings were augmented by a bioinformatic re-evaluation of ruminal Prevotella genomes, revealing additional loci not previously reported in the literature. Analysis of Bacteroidales-affiliated genomes reconstructed from a bovine rumen metagenome in a previous study further expanded the diversity of Sus-like PULs resident in this microbiome. Our findings suggest that Sus-like systems represent an important mechanism for degradation of a range of plant-derived glycans in ruminants.