PUL ID |
PUL0556 |
PubMed |
25139987, Proc Natl Acad Sci U S A. 2014 Sep 2;111(35):12901-6. doi: 10.1073/pnas.1407344111. Epub 2014 Aug 19. |
Characterization method |
gene deletion mutant and growth assay,qRT-PCR,microarray,enzyme activity assay |
Genomic accession number |
NC_016776.1 |
Nucelotide position range |
1583511-1593729 |
Substrate |
N-glycan |
Loci |
BF638R_1323-BF638R_1330 |
Species |
Bacteroides fragilis/817 |
Degradation or Biosynthesis |
degradation |
Gene Name |
Locus Tag |
Protein ID |
Gene Position |
GenBank Contig Range |
EC Number |
- | BF638R_RS06205 | WP_005786040.1 | 0 - 600 (-) | NC_016776.1:1583511-1584111 | - |
- | BF638R_RS06210 | WP_008768135.1 | 765 - 1776 (+) | NC_016776.1:1584276-1585287 | - |
- | BF638R_RS06215 | WP_005786045.1 | 2086 - 5392 (+) | NC_016776.1:1585597-1588903 | - |
- | BF638R_RS06220 | WP_005786046.1 | 5404 - 6949 (+) | NC_016776.1:1588915-1590460 | - |
- | BF638R_RS06225 | WP_005786048.1 | 6976 - 8029 (+) | NC_016776.1:1590487-1591540 | - |
- | BF638R_RS06230 | WP_014298454.1 | 8046 - 9183 (+) | NC_016776.1:1591557-1592694 | - |
- | BF638R_RS06235 | WP_005800908.1 | 9205 - 10219 (+) | NC_016776.1:1592716-1593730 | - |
Cluster number |
1 | ||
Gene name |
Gene position |
Gene type |
Found by CGCFinder? |
- | 1 - 600 (-) | TF: DBD-Pfam|GerE | No |
- | 766 - 1776 (+) | STP: STP|FecR | No |
- | 2087 - 5392 (+) | TC: gnl|TC-DB|Q8A8X1|1.B.14.6.13 | Yes |
- | 5405 - 6949 (+) | TC: gnl|TC-DB|Q8A8X0|8.A.46.2.1 | Yes |
- | 6977 - 8029 (+) | CAZyme: GH18 | Yes |
- | 8047 - 9183 (+) | CDS | No |
- | 9206 - 10219 (+) | CDS | No |
Copyright 2020 © YIN LAB, UNL. All rights reserved. Designed by Catie Ausland and Jinfang Zheng. Maintained by Yanbin Yin.