alginate
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Alginates are from brown seaweeds, which are linear copolymers of MnA, β-1,4-D-mannuronic acid, and GlcA, α-1,4-L-guluronic acid. It exists as polyMnA, polyGlcA, or polyMnA−GlcA blocks.
References
Li, Jin, et al. "Insights into Algal Polysaccharides: A Review of Their Structure, Depolymerases, and Metabolic Pathways." Journal of Agricultural and Food Chemistry 70.6 (2022): 1749-1765. Click here to redirect detail information.
CAZyme Gene Cluster:
| Substrate | Genome_ID | CGC_ID | CGC_Content | PUL_ID | Species Name |
|---|---|---|---|---|---|
| alginate | MGYG000000029 | MGYG000000029_9|CGC3 |
1.B.14.6.1,8.A.46.1.5,null,PL6_1|PL6,PL17_2,AraC_binding,2.A.1.14.25,null,PL38
|
PUL0055 | Bacteroides finegoldii |
| alginate | MGYG000000054 | MGYG000000054_17|CGC2 |
1.B.14.6.1,8.A.46.1.5,null,PL6_1|PL6,PL17|PL17_2,AraC_binding,2.A.1.14.25,null,PL38
|
PUL0055 | Bacteroides acidifaciens |
| alginate | MGYG000000312 | MGYG000000312_4|CGC2 |
3.A.1.1.10,3.A.1.1.10,3.A.1.1.10,HTH_AraC,PL15
|
PUL0216 | Eisenbergiella sp900539715 |
| alginate | MGYG000000437 | MGYG000000437_33|CGC1 |
PL38,null,2.A.1.14.25,null,PL17|PL17_2,PL6_1|PL6
|
PUL0199 | Alistipes sp001941065 |
| alginate | MGYG000000633 | MGYG000000633_29|CGC2 |
3.A.1.1.34,3.A.1.1.36,SBP_bac_1,null,CE15,null,null,PL0|PL35,GH148
|
PUL0155 | Victivallis sp900768515 |
| alginate | MGYG000000852 | MGYG000000852_1|CGC3 |
GH88|PL38,GH2,1.B.14.6.1,8.A.46.1.5,null,PL6|PL6_1,PL17|PL17_2,AraC_binding,2.A.1.14.25,null,PL38
|
PUL0055 | Prevotella sp900545525 |
| alginate | MGYG000001056 | MGYG000001056_208|CGC1 |
PL38,null,2.A.1.14.25,null,PL17|PL17_2,null,PL6_1|PL6,null,8.A.46.1.5,1.B.14.6.1
|
PUL0055 | Prevotella sp900556395 |
| alginate | MGYG000001279 | MGYG000001279_50|CGC1 |
2.A.50.2.1,PL5_1|PL5,null,null,1.B.13.1.1,null,null,GT2
|
PUL0572 | Pseudomonas |
| alginate | MGYG000001313 | MGYG000001313_17|CGC2 |
2.A.4.7.9,null,null,PL6|PL6_1,null,8.A.46.1.2,1.B.14.6.1,null,PL17|PL17_2,null,2.A.1.14.25
|
PUL0056 | Bacteroides eggerthii |
| alginate | MGYG000001371 | MGYG000001371_136|CGC2 |
PL15|PL15_1,PL17,PALP,8.A.59.2.1,HTH_AraC+HTH_AraC,SBP_bac_1,3.A.1.1.29,3.A.1.1.10,null,GH88
|
PUL0155 | Paenibacillus lautus |
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