alginate
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Alginates are from brown seaweeds, which are linear copolymers of MnA, β-1,4-D-mannuronic acid, and GlcA, α-1,4-L-guluronic acid. It exists as polyMnA, polyGlcA, or polyMnA−GlcA blocks.
References
Li, Jin, et al. "Insights into Algal Polysaccharides: A Review of Their Structure, Depolymerases, and Metabolic Pathways." Journal of Agricultural and Food Chemistry 70.6 (2022): 1749-1765. Click here to redirect detail information.
CAZyme Gene Cluster:
| Substrate | Genome_ID | CGC_ID | CGC_Content | PUL_ID | Species Name |
|---|---|---|---|---|---|
| alginate | MGYG000000029 | MGYG000000029_9|CGC3 |
1.B.14.6.1,8.A.46.1.5,null,PL6_1|PL6,PL17_2,AraC_binding,2.A.1.14.25,null,PL38
|
PUL0055 | Bacteroides finegoldii |
| alginate | MGYG000000054 | MGYG000000054_17|CGC2 |
1.B.14.6.1,8.A.46.1.5,null,PL6_1|PL6,PL17|PL17_2,AraC_binding,2.A.1.14.25,null,PL38
|
PUL0055 | Bacteroides acidifaciens |
| alginate | MGYG000000312 | MGYG000000312_4|CGC2 |
3.A.1.1.10,3.A.1.1.10,3.A.1.1.10,HTH_AraC,PL15
|
PUL0216 | Eisenbergiella sp900539715 |
| alginate | MGYG000000437 | MGYG000000437_33|CGC1 |
PL38,null,2.A.1.14.25,null,PL17|PL17_2,PL6_1|PL6
|
PUL0199 | Alistipes sp001941065 |
| alginate | MGYG000000633 | MGYG000000633_29|CGC2 |
3.A.1.1.34,3.A.1.1.36,SBP_bac_1,null,CE15,null,null,PL0|PL35,GH148
|
PUL0155 | Victivallis sp900768515 |
| alginate | MGYG000000852 | MGYG000000852_1|CGC3 |
GH88|PL38,GH2,1.B.14.6.1,8.A.46.1.5,null,PL6|PL6_1,PL17|PL17_2,AraC_binding,2.A.1.14.25,null,PL38
|
PUL0055 | Prevotella sp900545525 |
| alginate | MGYG000001056 | MGYG000001056_208|CGC1 |
PL38,null,2.A.1.14.25,null,PL17|PL17_2,null,PL6_1|PL6,null,8.A.46.1.5,1.B.14.6.1
|
PUL0055 | Prevotella sp900556395 |
| alginate | MGYG000001279 | MGYG000001279_50|CGC1 |
2.A.50.2.1,PL5_1|PL5,null,null,1.B.13.1.1,null,null,GT2
|
PUL0572 | Pseudomonas |
| alginate | MGYG000001313 | MGYG000001313_17|CGC2 |
2.A.4.7.9,null,null,PL6|PL6_1,null,8.A.46.1.2,1.B.14.6.1,null,PL17|PL17_2,null,2.A.1.14.25
|
PUL0056 | Bacteroides eggerthii |
| alginate | MGYG000001371 | MGYG000001371_136|CGC2 |
PL15|PL15_1,PL17,PALP,8.A.59.2.1,HTH_AraC+HTH_AraC,SBP_bac_1,3.A.1.1.29,3.A.1.1.10,null,GH88
|
PUL0155 | Paenibacillus lautus |
| alginate | MGYG000001404 | MGYG000001404_5|CGC2 |
2.A.53.3.4,PL15_1|PL15,PL17,null,8.A.59.2.1,HTH_AraC+HTH_AraC,SBP_bac_1,3.A.1.1.29,3.A.1.1.10
|
PUL0155 | Paenibacillus |
| alginate | MGYG000001436 | MGYG000001436_1|CGC7 |
PL17,null,null,CBM32|PL6|PL6_2|GH16,8.A.59.2.1,HTH_AraC+HTH_AraC,SBP_bac_1,3.A.1.1.29,3.A.1.1.10
|
PUL0199 | Paenibacillus |
| alginate | MGYG000001485 | MGYG000001485_6|CGC6 |
2.A.50.2.1,PL5_1|PL5,null,null,1.B.13.1.1,null,null,GT2
|
PUL0572 | Pseudomonas |
| alginate | MGYG000001542 | MGYG000001542_9|CGC1 |
PL15|PL15_1,null,8.A.59.2.1,HTH_AraC+HTH_AraC,3.A.1.1.29,null,3.A.1.1.29,3.A.1.1.10,2.A.1.31.4
|
PUL0155 | Paenibacillus |
| alginate | MGYG000001663 | MGYG000001663_26|CGC1 |
PL6|PL6_1,PL17_2,AraC_binding,2.A.1.14.25,null,PL38
|
PUL0199 | Alistipes sp900760675 |
| alginate | MGYG000001770 | MGYG000001770_24|CGC1 |
1.B.14.6.1,8.A.46.1.5,null,PL6|PL6_1,PL17_2|PL17,null,2.A.1.14.25,null,PL38,null,null,1.A.33.1.2
|
PUL0055 | Prevotella sp900313215 |
| alginate | MGYG000002082 | MGYG000002082_9|CGC1 |
1.B.9.4.3,null,null,1.B.14.6.1,PL6_1|PL6,PL17_2|PL17
|
PUL0055 | Alistipes sp900544265 |
| alginate | MGYG000002272 | MGYG000002272_4|CGC1 |
3.A.1.1.10,3.A.1.1.10,3.A.1.1.10,null,null,3.A.1.1.26,null,null,PL0|PL34,PL0|PL17,null,AraC_binding,3.A.7.19.1
|
PUL0155 | Faecalibacterium prausnitzii |
| alginate | MGYG000002293 | MGYG000002293_7|CGC3 |
1.B.14.6.1,8.A.46.1.5,null,PL6|PL6_1,PL17_2|PL17,AraC_binding,2.A.1.14.25,null,PL38
|
PUL0055 | Prevotella sp900557255 |
| alginate | MGYG000002326 | MGYG000002326_50|CGC1 |
3.A.1.1.10,3.A.1.1.29,3.A.1.1.10,HTH_AraC+HTH_AraC,8.A.59.2.1,AraC_binding,null,PL15_1|PL15,CBM32
|
PUL0155 | Alkalihalobacillus alcalophilus |
| alginate | MGYG000002381 | MGYG000002381_61|CGC1 |
2.A.1.14.25,PL17|PL17_2,PL6|PL6_1,1.B.14.12.1,GntR,null,1.B.71.1.4,2.A.1.36.3
|
PUL0053 | Stenotrophomonas bentonitica |
| alginate | MGYG000002414 | MGYG000002414_1|CGC44 |
CBM32,null,3.A.1.1.10,3.A.1.1.29,HTH_AraC+HTH_AraC,8.A.59.2.1,null,PL17,PL15_1|PL15,3.A.1.1.29
|
PUL0155 | Paenibacillus odorifer |
| alginate | MGYG000002439 | MGYG000002439_19|CGC1 |
3.A.1.1.46,null,null,PL0|PL34,PL0|PL17,null,AraC_binding,GH88
|
PUL0151 | CHH4-2 sp002899675 |
| alginate | MGYG000002463 | MGYG000002463_13|CGC3 |
4.A.2.1.17,PfkB,4.A.2.1.17,null,null,2.A.7.22.1,GT83,null,null,GT2,Aminotran_1_2,GT4,null,null,2.A.50.2.1,PL5|PL5_1,null,null,1.B.13.1.1,null,null,GT2,null,null,3.A.1.10.4,null,null,1.B.12.5.6,3.D.1.9.2
|
PUL0572 | Pseudomonas aeruginosa |
| alginate | MGYG000002490 | MGYG000002490_4|CGC1 |
2.A.7.1.4,2.A.7.1.4,PL33_1|PL0,HTH_AraC+HTH_AraC,3.A.1.1.29,3.A.1.1.10,3.A.1.1.10,null,LacI,GH31,9.B.20.1.4,3.A.1.1.2,3.A.1.1.2,3.A.1.1.2
|
PUL0155 | Paenibacillus |
| alginate | MGYG000002685 | MGYG000002685_69|CGC1 |
PL35|CBM32,3.A.1.1.10,3.A.1.1.10,3.A.1.1.10,PL33_2|PL0
|
PUL0155 | |
| alginate | MGYG000002817 | MGYG000002817_26|CGC1 |
3.A.1.1.2,3.A.1.1.2,3.A.1.1.2,9.B.20.1.4,GH31,LacI,null,3.A.1.1.10,3.A.1.1.10,3.A.1.1.29,HTH_AraC+HTH_AraC,null,PL33_1|PL0,2.A.7.1.4,2.A.7.1.4
|
PUL0155 | Paenibacillus |
| alginate | MGYG000002885 | MGYG000002885_8|CGC1 |
GT2,null,null,1.B.13.1.1,null,null,PL5|PL5_1
|
PUL0572 | Pseudomonas |
| alginate | MGYG000003072 | MGYG000003072_37|CGC1 |
CBM32,SBP_bac_1,PL15_1|PL15,null,9.B.33.1.1,HTH_AraC+HTH_AraC,3.A.1.1.29,3.A.1.1.10
|
PUL0155 | Paenibacillus amylolyticus |
| alginate | MGYG000003208 | MGYG000003208_24|CGC3 |
2.A.50.2.1,PL5_1|PL5,null,null,1.B.13.1.1,null,null,GT2,null,null,3.A.23.1.1
|
PUL0572 | Pseudomonas |
| alginate | MGYG000003252 | MGYG000003252_52|CGC10 |
1.B.14.6.1,8.A.46.1.5,null,PL6_1|PL6,PL17|PL17_2,AraC_binding,2.A.1.14.25,null,PL38
|
PUL0055 | Bacteroides sp900761785 |
| alginate | MGYG000003279 | MGYG000003279_12|CGC1 |
GH20,GH36,null,GH88|PL29,PL17|PL17_2,PL6|PL6_1,PL6|PL6_1,null,8.A.46.1.5,1.B.14.6.1
|
PUL0055 | Alistipes sp900541585 |
| alginate | MGYG000003351 | MGYG000003351_131|CGC1 |
PL38,null,2.A.1.14.25,AraC_binding,PL17|PL17_2,PL6_1|PL6,null,8.A.46.1.5,1.B.14.6.1,GntR,GH109,null,1.B.14.6.1
|
PUL0055 | Bacteroides sp900765785 |
| alginate | MGYG000003403 | MGYG000003403_1|CGC2 |
PL6|PL6_1,PL17_2|PL17,2.A.1.14.25
|
PUL0053 | Stenotrophomonas maltophilia |
| alginate | MGYG000003711 | MGYG000003711_3|CGC1 |
PL6|PL6_1,PL17_2|PL17,2.A.1.14.25
|
PUL0053 | Stenotrophomonas maltophilia |
| alginate | MGYG000003831 | MGYG000003831_11|CGC1 |
2.A.1.14.25,null,PL17_2|PL17,PL6|PL6_1,null,8.A.46.1.5,1.B.14.6.1,null,8.A.21.2.2,null,GH16|GH16_3,1.B.14.6.1,null,null,GH5_46|GH5,GH3,GH3,1.A.62.2.1
|
PUL0055 | |
| alginate | MGYG000003834 | MGYG000003834_4|CGC1 |
3.A.1.1.10,3.A.1.1.10,3.A.1.1.10,HTH_AraC,PL15
|
PUL0216 | Eisenbergiella sp900550285 |
| alginate | MGYG000004003 | MGYG000004003_7|CGC2 |
PL38,null,2.A.1.14.25,null,PL17_2|PL17,PL6|PL6_1,null,8.A.46.1.5,1.B.14.6.1
|
PUL0055 | |
| alginate | MGYG000004044 | MGYG000004044_76|CGC1 |
3.A.1.135.5,3.A.1.135.5,PL0|PL33_1
|
PUL0155 | UMGS1633 sp900553645 |
| alginate | MGYG000004151 | MGYG000004151_80|CGC1 |
GT4,null,null,2.A.50.2.1,PL5_1|PL5,null,null,1.B.13.1.1,null,null,GT2
|
PUL0572 | Pseudomonas citronellolis |
| alginate | MGYG000004172 | MGYG000004172_1|CGC3 |
PL38,null,2.A.1.14.25,null,PL17_2,PL6|PL6_1
|
PUL0199 | |
| alginate | MGYG000004708 | MGYG000004708_20|CGC1 |
PL38,null,2.A.1.14.25,null,PL17|PL17_2,PL6|PL6_1,null,8.A.46.1.5,1.B.14.6.1
|
PUL0055 |