Database for Polyphenol Utilized Proteins from gut microbiota
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Currently the dbPUP database contains:

Characterized Proteins Statistics

Total number of proteins 60
Number of different substrates: 64
Number of sequences with PDB code 10
Number of sequences with EC 36
Number of sequences from Archaea 3
Number of sequences from Bacteria 57

General Statistics (Homologs from UniProt)

Total number of sequences 56,694
Number of sequences from Swiss-Prot 5,788
Number of sequences from TrEMBL 50,906
Number of sequences with PDB code 497
Number of sequences with EC 4,674
Number of sequences from Archaea 501
Number of sequences from Bacteria 47,898
Number of sequences from Eukaryota 7,766
Number of sequences from Viruses 24

Class Statistics

Total number of sequences 24,519
Number of family 9
Number of sequences from Swiss-Prot 2,376
Number of sequences from TrEMBL 22,143
Number of sequences with PDB code 245
Number of sequences with EC 1,645
Number of sequences from Archaea 275
Number of sequences from Bacteria 22,483
Number of sequences from Eukaryota 1,483
Number of sequences from Viruses 8
Total number of sequences 3,787
Number of family 4
Number of sequences from Swiss-Prot 196
Number of sequences from TrEMBL 3,591
Number of sequences with PDB code 50
Number of sequences with EC 186
Number of sequences from Archaea 14
Number of sequences from Bacteria 3,538
Number of sequences from Eukaryota 213
Number of sequences from Viruses 0
Total number of sequences 18,438
Number of family 8
Number of sequences from Swiss-Prot 1,099
Number of sequences from TrEMBL 17,339
Number of sequences with PDB code 134
Number of sequences with EC 976
Number of sequences from Archaea 97
Number of sequences from Bacteria 14,877
Number of sequences from Eukaryota 3,272
Number of sequences from Viruses 6
Total number of sequences 3,068
Number of family 1
Number of sequences from Swiss-Prot 20
Number of sequences from TrEMBL 3,048
Number of sequences with PDB code 9
Number of sequences with EC 17
Number of sequences from Archaea 15
Number of sequences from Bacteria 2,013
Number of sequences from Eukaryota 936
Number of sequences from Viruses 0
Total number of sequences 125
Number of family 2
Number of sequences from Swiss-Prot 35
Number of sequences from TrEMBL 90
Number of sequences with PDB code 5
Number of sequences with EC 28
Number of sequences from Archaea 1
Number of sequences from Bacteria 106
Number of sequences from Eukaryota 213
Number of sequences from Viruses 18
Total number of sequences 6,757
Number of family 2
Number of sequences from Swiss-Prot 2,062
Number of sequences from TrEMBL 4,695
Number of sequences with PDB code 54
Number of sequences with EC 1,822
Number of sequences from Archaea 99
Number of sequences from Bacteria 4,791
Number of sequences from Eukaryota 1,844
Number of sequences from Viruses 10

General Statistics (Homologs from UHGP)

Total number of sequences 51,157
Number of genomes 39,296
Number of classes 6
Number of families 25
Number of sequences from Archaea 6
Number of sequences from Bacteria 51,659
Total number of sequences 17,873
Number of genomes 15,174
Number of sequences from Archaea 5
Number of sequences from Bacteria 17,868
Total number of sequences 8,102
Number of genomes 6,955
Number of sequences from Archaea 0
Number of sequences from Bacteria 8,102
Total number of sequences 21,268
Number of genomes 17,079
Number of sequences from Archaea 0
Number of sequences from Bacteria 21,268
Total number of sequences 953
Number of genomes 941
Number of sequences from Archaea 0
Number of sequences from Bacteria 953
Total number of sequences 58
Number of genomes 55
Number of sequences from Archaea 0
Number of sequences from Bacteria 58
Total number of sequences 2,904
Number of genomes 2,712
Number of sequences from Archaea 1
Number of sequences from Bacteria 2,903

Copyright © 2022 University of Nebraska-Lincoln | Dr. Yin's Lab at UNL
Handcoded by Pengxiang Zhang & Yinchao He.