| Basic Information | |
|---|---|
| Species | Ricinus communis |
| Cazyme ID | 30692.m000027 |
| Family | GH23 |
| Protein Properties | Length: 277 Molecular Weight: 31677.1 Isoelectric Point: 9.4888 |
| Chromosome | Chromosome/Scaffold: 30692 Start: 712 End: 1545 |
| Description | |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH23 | 99 | 229 | 2.4e-30 |
| RAIDEAWVYGIIRQESRFMHYAKSSVGAGGLMQVMPATAKWIAKKLGLNGYHDGMLHDIDTNVNLGTYYMRYTLDTFNGQEVMATAAYNAGPSRARRWAA NAPLEGAIYAETIPFSETRNYVKKVLANAHM | |||
| Full Sequence |
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| Protein Sequence Length: 277 Download |
| MATYQPGDDE VRQFAKQPAV KRMEALFDVE ARYEARLEWM YLLEALDDST RIVAAQYALL 60 KGWYDLAVLA ADKTSRTHNF ELRYPTPYRD YLQKASRSRA IDEAWVYGII RQESRFMHYA 120 KSSVGAGGLM QVMPATAKWI AKKLGLNGYH DGMLHDIDTN VNLGTYYMRY TLDTFNGQEV 180 MATAAYNAGP SRARRWAANA PLEGAIYAET IPFSETRNYV KKVLANAHMY APRLGLPMLT 240 LKKRLGTIPA RSTADARECH DDNQHFRARV NPWFKQD |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PRK11671 | mltC | 2.0e-10 | 88 | 223 | 161 | + murein transglycosylase C; Provisional |
| pfam01464 | SLT | 2.0e-24 | 90 | 201 | 112 | + Transglycosylase SLT domain. This family is distantly related to pfam00062. Members are found in phages, type II, type III and type IV secretion systems. |
| cd00254 | LT_GEWL | 3.0e-27 | 104 | 227 | 125 | + Lytic Transglycosylase (LT) and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic "goose-type" lysozymes (GEWL). LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. |
| COG0741 | MltE | 9.0e-37 | 9 | 243 | 238 | + Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) [Cell envelope biogenesis, outer membrane] |
| PRK11619 | PRK11619 | 3.0e-45 | 15 | 225 | 214 | + lytic murein transglycosylase; Provisional |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_002536629.1 | 0 | 1 | 277 | 1 | 277 | lytic transglycosylase, putative [Ricinus communis] |
| RefSeq | YP_003049424.1 | 0 | 4 | 252 | 414 | 662 | Lytic transglycosylase catalytic [Methylotenera mobilis JLW8] |
| RefSeq | YP_003050244.1 | 0 | 2 | 245 | 395 | 638 | Lytic transglycosylase catalytic [Methylovorus sp. SIP3-4] |
| RefSeq | YP_546369.1 | 0 | 4 | 250 | 415 | 661 | lytic transglycosylase, catalytic [Methylobacillus flagellatus KT] |
| RefSeq | ZP_04832163.1 | 0 | 2 | 252 | 394 | 644 | Lytic transglycosylase catalytic [Gallionella ferruginea ES-2] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1qte_A | 1e-38 | 14 | 225 | 379 | 593 | A Chain A, Pnb Esterase 56c8 |
| PDB | 1qsa_A | 1e-38 | 14 | 225 | 379 | 593 | A Chain A, Crystal Structure Of The 70 Kda Soluble Lytic Transglycosylase Slt70 From Escherichia Coli At 1.65 Angstroms Resolution |
| PDB | 1sly_A | 3e-37 | 14 | 225 | 379 | 593 | A Chain A, Complex Of The 70-Kda Soluble Lytic Transglycosylase With Bulgecin A |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FG600358 | 83 | 156 | 237 | 0.00000000000003 |
| HO423184 | 111 | 117 | 225 | 0.00000000001 |
| FE625482 | 142 | 80 | 204 | 0.0002 |
| EY714562 | 142 | 80 | 204 | 0.0003 |
| GT022377 | 132 | 80 | 194 | 0.0003 |
| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Picea abies | MA_158766g0100 | MA_158760g0070 | MA_159146g0030 | MA_159036g0330 | |
| Ricinus communis | 28599.m000063 | 30333.m000034 | 33357.m000019 | ||
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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