y
Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 33357.m000019 |
Family | GH23 |
Protein Properties | Length: 254 Molecular Weight: 26864.2 Isoelectric Point: 9.768 |
Chromosome | Chromosome/Scaffold: 33357 Start: 7 End: 770 |
Description | |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH23 | 138 | 245 | 7.8e-21 |
LDPLLILAVMSIESGLNPFAESPMGAQGLMQVMSKVHHEKFQDMGGLQAALNPVANIRVGALILKDYVTKGGSVEAGLKSYVGAAAFETDDGYGSRVMAE YNRLKQVS |
Full Sequence |
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Protein Sequence Length: 254 Download |
MASQPAAWFS TTRISAKGVL TTAQHTLTVV GVTALVVMAV LFVRPDLAKA LSDSLNRTPE 60 VETVAVTAPP LSALMDAPAA ATPAAAPAPL SAEEKALLGT QKQQQWVTTW LSKRYRVAGD 120 AANMLVSTAY LTAREIKLDP LLILAVMSIE SGLNPFAESP MGAQGLMQVM SKVHHEKFQD 180 MGGLQAALNP VANIRVGALI LKDYVTKGGS VEAGLKSYVG AAAFETDDGY GSRVMAEYNR 240 LKQVSAGKKC RPPR 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK11619 | PRK11619 | 1.0e-5 | 147 | 205 | 67 | + lytic murein transglycosylase; Provisional | ||
PRK11671 | mltC | 4.0e-6 | 133 | 170 | 38 | + murein transglycosylase C; Provisional | ||
COG0741 | MltE | 1.0e-11 | 99 | 249 | 182 | + Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) [Cell envelope biogenesis, outer membrane] | ||
cd00254 | LT_GEWL | 1.0e-13 | 140 | 239 | 113 | + Lytic Transglycosylase (LT) and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic "goose-type" lysozymes (GEWL). LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. | ||
pfam01464 | SLT | 5.0e-14 | 138 | 218 | 84 | + Transglycosylase SLT domain. This family is distantly related to pfam00062. Members are found in phages, type II, type III and type IV secretion systems. |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 4hjv_E | 0.008 | 138 | 202 | 52 | 122 | A Chain A, Crystal Structure Of Putative Beta-galactosidase From Bacteroides Fragilis |
PDB | 4hjv_D | 0.008 | 138 | 202 | 52 | 122 | A Chain A, Crystal Structure Of Putative Beta-galactosidase From Bacteroides Fragilis |
PDB | 4hjv_C | 0.008 | 138 | 202 | 52 | 122 | A Chain A, Crystal Structure Of Putative Beta-galactosidase From Bacteroides Fragilis |
PDB | 4hjv_B | 0.008 | 138 | 202 | 52 | 122 | A Chain A, Crystal Structure Of Putative Beta-galactosidase From Bacteroides Fragilis |
PDB | 4hjv_A | 0.008 | 138 | 202 | 52 | 122 | A Chain A, Crystal Structure Of Putative Beta-galactosidase From Bacteroides Fragilis |
Transmembrane Domains | |||||
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Start | End | ||||
21 | 43 |
Orthologous Group | |||||
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Species | ID | ||||
Picea abies | MA_158766g0100 | MA_158760g0070 | MA_159146g0030 | MA_159036g0330 | |
Ricinus communis | 28599.m000063 | 30333.m000034 | 30692.m000027 |
Sequence Alignments (This image is cropped. Click for full image.) |
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