| Basic Information | |
|---|---|
| Species | Ricinus communis |
| Cazyme ID | 29634.m002061 |
| Family | AA4 |
| Protein Properties | Length: 566 Molecular Weight: 62645.7 Isoelectric Point: 6.4668 |
| Chromosome | Chromosome/Scaffold: 29634 Start: 56842 End: 68236 |
| Description | FAD-linked oxidases family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
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| Family | Start | End | Evalue |
| AA4 | 106 | 311 | 3.6e-23 |
| IAYFKGILGEKNVIEDEDRLESANTDWMHKYKGSSKLLLLPTTTQEVSQILKYCNSRRLAVVPQGGNTGLVGGSVPVFDEVIINLSSMNNIVAFDEVSGI LVCEAGCILENLITFLDNKGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGTVLGIEAVLANGNVLDMLGTLRKDNTGYDLKHLFIGSEGSLGII TKLSIL | |||
| Full Sequence |
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| Protein Sequence Length: 566 Download |
| MNLHSKLGHA MHVGQDYGEV QSNPSHFPAT VLSPSFHSPL HFRQPSITHN FRINGERQYQ 60 KQELQTCALW PFVERSIGFQ YRGFGTAATK FIQRNPSFAT LNCDDIAYFK GILGEKNVIE 120 DEDRLESANT DWMHKYKGSS KLLLLPTTTQ EVSQILKYCN SRRLAVVPQG GNTGLVGGSV 180 PVFDEVIINL SSMNNIVAFD EVSGILVCEA GCILENLITF LDNKGFIMPL DLGAKGSCQI 240 GGNVSTNAGG LRLVRYGSLH GTVLGIEAVL ANGNVLDMLG TLRKDNTGYD LKHLFIGSEG 300 SLGIITKLSI LTPPKLSSVN IAFLACKDYL SCQKLLLEAK RKLGEILSAF EFLDSEAMGL 360 VLNHLEGVRN PFPPMHNFYV LIETTGSDES YDKEKLEAFL LHSMESGLIS DGVLAQDINQ 420 ASSFWRIREG IPEALMRAGP VYKYDLSLPV EHMYNLVEET RERLAQKAKV VGYGHLGDGN 480 LHLNISAPQY DDLILAQIEP YVYEWTSKHR GSISAEHGLG LMKANEIFYS KSHETVQVMA 540 SIKKLLDPKG ILNPYKVLPQ SLSSYE |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK11230 | PRK11230 | 6.0e-37 | 118 | 559 | 459 | + glycolate oxidase subunit GlcD; Provisional | ||
| PLN02805 | PLN02805 | 9.0e-41 | 106 | 559 | 466 | + D-lactate dehydrogenase [cytochrome] | ||
| pfam02913 | FAD-oxidase_C | 1.0e-62 | 315 | 557 | 251 | + FAD linked oxidases, C-terminal domain. This domain has a ferredoxin-like fold. | ||
| TIGR00387 | glcD | 1.0e-75 | 144 | 556 | 429 | + glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity [Energy metabolism, Other]. | ||
| COG0277 | GlcD | 2.0e-110 | 108 | 559 | 463 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
| GO:0016491 | oxidoreductase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB16815.1 | 0 | 71 | 564 | 30 | 523 | actin interacting protein [Arabidopsis thaliana] |
| RefSeq | NP_568003.2 | 0 | 71 | 564 | 62 | 558 | FAD linked oxidase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002268002.1 | 0 | 75 | 564 | 61 | 550 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002310828.1 | 0 | 81 | 565 | 48 | 529 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002521506.1 | 0 | 1 | 566 | 1 | 566 | d-lactate dehydrognease 2, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3pm9_F | 0 | 97 | 558 | 9 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_E | 0 | 97 | 558 | 9 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_D | 0 | 97 | 558 | 9 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_C | 0 | 97 | 558 | 9 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_B | 0 | 97 | 558 | 9 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| GO838775 | 330 | 146 | 474 | 0 |
| CO071824 | 285 | 128 | 411 | 0 |
| CO071363 | 284 | 128 | 410 | 0 |
| GO839525 | 331 | 135 | 464 | 0 |
| HO419275 | 407 | 157 | 561 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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