| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10015768m |
| Family | GH51 |
| Protein Properties | Length: 679 Molecular Weight: 75104.6 Isoelectric Point: 5.5233 |
| Chromosome | Chromosome/Scaffold: 3 Start: 3424137 End: 3427772 |
| Description | alpha-L-arabinofuranosidase 1 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH51 | 215 | 666 | 0 |
| PSARLQLTTTKKGSIWIDQVSAMPVDTYKGHGFRNDLFQMMVDIKPRFIRFPGGCFVEGEWLSNAFRWKETVGPWEERPGHFGDVWKYWTDDGLGHFEFF QLAEDIGAAPIWVFNNGISHNDEVETASIMPFVQEALDGIEFARGDANSTWGSVRAKMGRQEPFELKYVAIGNEDCGKTYYRGNYIVFYDAIKKAYPDIK IISNCDGSSRPLDHPADYYDYHIYTSASNLFSMYHQFDRTSRHGPKAFVSEYAVTGKDAGTGSLLASLAEAAFLIGLEKNSDIVEMASYAPLFVNTNDRR WNPDAIVFNSSHLYGTPSYWVQRFFAESSGATLLTSTLKGNSSSLVASAISWKNNGKDYIRLKAVNFGTNSVNMKVLVTGLDPNVMKVSGSKKTVLTSTN VMDENSFSQPEKVVPHESLLELAEEDLTVVLPPHSFSSFDLLKESAKIKMPI | |||
| Full Sequence |
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| Protein Sequence Length: 679 Download |
| MDMESWKLLR SICILSFLLG SCFVYQSLRV VDAQEDPKPA VTFQVDASNG AGRPIPETLF 60 GIFFEEINHA GAGGLWAELV SNRGFEAGGQ NIPSNIWPWS IVGDHSSIYV ATDRSSCFER 120 NKIALRMDVL CDSQGCPSGG VGVYNPGYWG MNIQEGKKYK VALYVRSTGD IDVSVSFTSS 180 NGSLTLASEK ITASASDVSK WTRKEVLLES KGTDPSARLQ LTTTKKGSIW IDQVSAMPVD 240 TYKGHGFRND LFQMMVDIKP RFIRFPGGCF VEGEWLSNAF RWKETVGPWE ERPGHFGDVW 300 KYWTDDGLGH FEFFQLAEDI GAAPIWVFNN GISHNDEVET ASIMPFVQEA LDGIEFARGD 360 ANSTWGSVRA KMGRQEPFEL KYVAIGNEDC GKTYYRGNYI VFYDAIKKAY PDIKIISNCD 420 GSSRPLDHPA DYYDYHIYTS ASNLFSMYHQ FDRTSRHGPK AFVSEYAVTG KDAGTGSLLA 480 SLAEAAFLIG LEKNSDIVEM ASYAPLFVNT NDRRWNPDAI VFNSSHLYGT PSYWVQRFFA 540 ESSGATLLTS TLKGNSSSLV ASAISWKNNG KDYIRLKAVN FGTNSVNMKV LVTGLDPNVM 600 KVSGSKKTVL TSTNVMDENS FSQPEKVVPH ESLLELAEED LTVVLPPHSF SSFDLLKESA 660 KIKMPISDSS SHQKTTTL* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3534 | AbfA | 0.0005 | 493 | 651 | 178 | + Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism] | ||
| COG3534 | AbfA | 6.0e-31 | 246 | 391 | 146 | + Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism] | ||
| pfam06964 | Alpha-L-AF_C | 7.0e-40 | 489 | 649 | 171 | + Alpha-L-arabinofuranosidase C-terminus. This family represents the C-terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (EC:3.2.1.55). This catalyzes the hydrolysis of nonreducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
| smart00813 | Alpha-L-AF_C | 5.0e-48 | 464 | 649 | 199 | + Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0046373 | L-arabinose metabolic process |
| GO:0046556 | alpha-N-arabinofuranosidase activity |
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK50089.1 | 0 | 1 | 678 | 1 | 678 | AF372949_1 AT3g10740/T7M13_18 [Arabidopsis thaliana] |
| GenBank | AAO92261.1 | 0 | 1 | 678 | 1 | 678 | alpha-L-arabinofuranosidase [Arabidopsis thaliana] |
| RefSeq | NP_187685.1 | 0 | 1 | 678 | 1 | 678 | ASD1 (ALPHA-L-ARABINOFURANOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, acting on glycosyl bonds / xylan 1,4-beta-xylosidase [Arabidopsis thaliana] |
| RefSeq | NP_197984.2 | 0 | 1 | 678 | 1 | 674 | ASD2 (ALPHA-L-ARABINOFURANOSIDASE 2); alpha-N-arabinofuranosidase/ hydrolase, acting on glycosyl bonds [Arabidopsis thaliana] |
| RefSeq | XP_002523672.1 | 0 | 36 | 672 | 35 | 675 | Alpha-N-arabinofuranosidase 1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3ug5_F | 1e-17 | 246 | 653 | 68 | 494 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
| PDB | 3ug5_E | 1e-17 | 246 | 653 | 68 | 494 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
| PDB | 3ug5_D | 1e-17 | 246 | 653 | 68 | 494 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
| PDB | 3ug5_C | 1e-17 | 246 | 653 | 68 | 494 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
| PDB | 3ug5_B | 1e-17 | 246 | 653 | 68 | 494 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| BX841311 | 333 | 1 | 333 | 0 |
| HO852683 | 414 | 246 | 655 | 0 |
| HO780740 | 400 | 274 | 670 | 0 |
| JG577027 | 333 | 103 | 435 | 0 |
| FY438994 | 281 | 354 | 633 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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