| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb08g001540.1 |
| Family | GH51 |
| Protein Properties | Length: 657 Molecular Weight: 72505.6 Isoelectric Point: 5.1668 |
| Chromosome | Chromosome/Scaffold: 8 Start: 1493767 End: 1500112 |
| Description | alpha-L-arabinofuranosidase 1 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH51 | 176 | 646 | 0 |
| QNLASATITVSGTSNWTKVEQKLVAKGTNRTSRLQIKTNKKGVVWLDQVSLMPEDTYKGHGFRTELISMLLDLKPRFLRFPGGCFVEGEWLRNAFRWRES IGPWEERPGHFGDVWHYWTDDGLGYYEFLQLAEDLGAAPIWVFNNGISHNDEVDTVAIAPFVKDVLDSLEFARGSADSTWGSVRAAMGHPEPFPVKHVAI GNEDCGKKFYRGNYLKFYNAIREAYPDIQMISNCDGSSRPLDHPADLYDFHVYTDSKTLFNMRSQFDRTSRSGPKAFVSEYAVWRSDAGRGSLLASLAEA AFLTGLEKNSDIVQMASYAPLFVNNNDQTWNPDAIVFNSWQHYGTPSYWMQTLFRESSGAMIHPINMSSRYSSSLAASAITWQDSENSFLRVKVVNFGSD TVSLTISTSGLQASVNSLGSTATVLTSGNVMDENSFSNPNKVAPVKSQLSNAGEQMQVTLAPHSFTTFDLA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 657 Download |
| MDLKQSFSTT IFCVLLLFCV GCRCRPLEIE ATQTATLKVD ATPQLARKIP ETLFGIFFEE 60 INHAGAGGIW AELVNNRGFE AGGPHTPSNI DPWSIIGDDS SIFVATDRTS CFSRNIVALR 120 MEVLCNDCPA GGVGVYNPGF WGMNIEDGKA YNLVMYVKSP ETTDLTVSLT SSDGLQNLAS 180 ATITVSGTSN WTKVEQKLVA KGTNRTSRLQ IKTNKKGVVW LDQVSLMPED TYKGHGFRTE 240 LISMLLDLKP RFLRFPGGCF VEGEWLRNAF RWRESIGPWE ERPGHFGDVW HYWTDDGLGY 300 YEFLQLAEDL GAAPIWVFNN GISHNDEVDT VAIAPFVKDV LDSLEFARGS ADSTWGSVRA 360 AMGHPEPFPV KHVAIGNEDC GKKFYRGNYL KFYNAIREAY PDIQMISNCD GSSRPLDHPA 420 DLYDFHVYTD SKTLFNMRSQ FDRTSRSGPK AFVSEYAVWR SDAGRGSLLA SLAEAAFLTG 480 LEKNSDIVQM ASYAPLFVNN NDQTWNPDAI VFNSWQHYGT PSYWMQTLFR ESSGAMIHPI 540 NMSSRYSSSL AASAITWQDS ENSFLRVKVV NFGSDTVSLT ISTSGLQASV NSLGSTATVL 600 TSGNVMDENS FSNPNKVAPV KSQLSNAGEQ MQVTLAPHSF TTFDLALAQS KLVAEM* 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3534 | AbfA | 1.0e-31 | 236 | 639 | 480 | + Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism] | ||
| pfam06964 | Alpha-L-AF_C | 1.0e-32 | 454 | 639 | 203 | + Alpha-L-arabinofuranosidase C-terminus. This family represents the C-terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (EC:3.2.1.55). This catalyzes the hydrolysis of nonreducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
| smart00813 | Alpha-L-AF_C | 1.0e-46 | 454 | 639 | 198 | + Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| GO:0046373 | L-arabinose metabolic process |
| GO:0046556 | alpha-N-arabinofuranosidase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN27961.1 | 0 | 1 | 656 | 1 | 656 | unknown [Zea mays] |
| GenBank | ACN33779.1 | 0 | 15 | 656 | 39 | 680 | unknown [Zea mays] |
| GenBank | EEC67598.1 | 0 | 1 | 656 | 1 | 658 | hypothetical protein OsI_34967 [Oryza sativa Indica Group] |
| RefSeq | NP_001148977.1 | 0 | 15 | 656 | 39 | 680 | alpha-N-arabinofuranosidase A [Zea mays] |
| RefSeq | XP_002442705.1 | 0 | 1 | 656 | 1 | 656 | hypothetical protein SORBIDRAFT_08g001540 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3s2c_L | 4e-22 | 236 | 647 | 48 | 483 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_K | 4e-22 | 236 | 647 | 48 | 483 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_J | 4e-22 | 236 | 647 | 48 | 483 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_I | 4e-22 | 236 | 647 | 48 | 483 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_H | 4e-22 | 236 | 647 | 48 | 483 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
