| APIS family ID | APIS003 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | restriction-modification (RM) | |||||||||||||
| CLAN ID | CLAN003 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | PMID:2989658 | |||||||||||||
| PDB structures | 2W82; | |||||||||||||
| Pfam domains | PF07275.14 | |||||||||||||
| Phrog | phrog_2059 | |||||||||||||
| Host taxa | d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli | |||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | DNA mimetics, i.e. structurally and electrostatically imitate the B-form of DNA and thus function as competitive inhibitors of restriction enzymes. | |||||||||||||
| MTDITTPSVY VGTYHKYNCG SIAGAWLDLT DFDSSEEFYE RCRELHANEA DPEFMFQDWE | 60 |
| GIPSDMASEC HINWDFINGF KQAREEGNEA AFVAFVDLFN STDFDLFRDA YMGEAKDEET | 120 |
| FAEEYLNDSG LLNEIPESVA RYFDIVAYAR DLFIGDFSLH DGHVFNMTC | 169 |
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| AF-A0A132ZEK5-F1-model_v4 | 1 | 163 | 2 | 167 | 0.8743 | 0.8325 |
| AF-A0A132P918-F1-model_v4 | 1 | 162 | 3 | 166 | 0.8665 | 0.827 |
| AF-A0A0H3GZQ3-F1-model_v4 | 1 | 162 | 7 | 168 | 0.7158 | 0.6614 |
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP000893777641.pdb | 1 | 162 | 3 | 166 | 0.9325 | 0.9013 |
| MGYP000458943499.pdb | 1 | 162 | 4 | 166 | 0.9239 | 0.8911 |
| MGYP000848843987.pdb | 1 | 162 | 2 | 165 | 0.9173 | 0.8846 |
| MGYP000617168049.pdb | 1 | 161 | 1 | 159 | 0.9054 | 0.8732 |
| MGYP000137953699.pdb | 1 | 162 | 3 | 164 | 0.9035 | 0.873 |
| MGYP003377220082.pdb | 1 | 162 | 3 | 162 | 0.8955 | 0.8695 |
| MGYP000410908502.pdb | 1 | 162 | 7 | 170 | 0.9132 | 0.8695 |
| MGYP001423205995.pdb | 1 | 162 | 4 | 166 | 0.9032 | 0.8688 |
| MGYP000163219366.pdb | 1 | 161 | 2 | 161 | 0.8947 | 0.8672 |
| MGYP000167629078.pdb | 1 | 162 | 4 | 166 | 0.9041 | 0.8661 |
| Fam ID | Seed protein | Member count | Model | Alignment |
|---|---|---|---|---|
| APIS003 | AAB36891.1 | 211 | HMM model | Member alignment |
