APIS family ID | APIS003 | |||||||||||||
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Inhibited defense system | restriction-modification (RM) | |||||||||||||
CLAN ID | CLAN003 | |||||||||||||
Seed protein property |
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Phage property |
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PMID/References | PMID:2989658 | |||||||||||||
PDB structures | 2W82; | |||||||||||||
Pfam domains | PF07275.14 | |||||||||||||
Phrog | phrog_2059 | |||||||||||||
Host taxa | d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli | |||||||||||||
Gene Location | Start: ; End: ; Strand: | |||||||||||||
Description | DNA mimetics, i.e. structurally and electrostatically imitate the B-form of DNA and thus function as competitive inhibitors of restriction enzymes. |
Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
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AF-A0A132ZEK5-F1-model_v4 | 1 | 163 | 2 | 167 | 0.8743 | 0.8325 |
AF-A0A132P918-F1-model_v4 | 1 | 162 | 3 | 166 | 0.8665 | 0.827 |
AF-A0A0H3GZQ3-F1-model_v4 | 1 | 162 | 7 | 168 | 0.7158 | 0.6614 |
Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
---|---|---|---|---|---|---|
MGYP000893777641.pdb | 1 | 162 | 3 | 166 | 0.9325 | 0.9013 |
MGYP000458943499.pdb | 1 | 162 | 4 | 166 | 0.9239 | 0.8911 |
MGYP000848843987.pdb | 1 | 162 | 2 | 165 | 0.9173 | 0.8846 |
MGYP000617168049.pdb | 1 | 161 | 1 | 159 | 0.9054 | 0.8732 |
MGYP000137953699.pdb | 1 | 162 | 3 | 164 | 0.9035 | 0.873 |
MGYP003377220082.pdb | 1 | 162 | 3 | 162 | 0.8955 | 0.8695 |
MGYP000410908502.pdb | 1 | 162 | 7 | 170 | 0.9132 | 0.8695 |
MGYP001423205995.pdb | 1 | 162 | 4 | 166 | 0.9032 | 0.8688 |
MGYP000163219366.pdb | 1 | 161 | 2 | 161 | 0.8947 | 0.8672 |
MGYP000167629078.pdb | 1 | 162 | 4 | 166 | 0.9041 | 0.8661 |
Fam ID | Seed protein | Member count | Model | Alignment | APIS003 | AAB36891.1 | 211 | HMM model | Member alignment |
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Hit APIS family | E-Value | Query Start | Query End | Hit Start | Hit End | Immune system | Seed protein |
---|---|---|---|---|---|---|---|
APIS063 | 3.34E-76 | 31 | 197 | 10 | 173 | IMGVR_UViG_3300031923_000006|3300031923|Ga0326331_1000015821 | |
APIS067 | 1.59E-68 | 17 | 197 | 27 | 206 | IMGVR_UViG_3300035506_000204|3300035506|Ga0376461_0000200_6069_6716 | |
APIS051 | 5.51E-67 | 22 | 197 | 45 | 222 | IMGVR_UViG_3300012016_000701|3300012016|Ga0120387_100082722 | |
APIS072 | 3.01E-63 | 31 | 197 | 49 | 223 | IMGVR_UViG_3300039331_000150|3300039331|Ga0169804_01911_10006_10671 |