| APIS family ID | APIS063 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN003 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF07275.14 | |||||||||||||
| Phrog | phrog_2059 | |||||||||||||
| Host taxa | ||||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending restriction-modification (RM) because it belongs to the same clan as family APIS003,ardu which has seed protein. | |||||||||||||
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| AF-A0A0H3GZQ3-F1-model_v4 | 1 | 170 | 1 | 168 | 0.7381 | 0.697 |
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP001765688937.pdb | 6 | 170 | 1 | 164 | 0.8602 | 0.8187 |
| MGYP003116281433.pdb | 6 | 170 | 1 | 166 | 0.8605 | 0.8166 |
| MGYP000929534928.pdb | 8 | 170 | 1 | 161 | 0.8624 | 0.8162 |
| MGYP003514633148.pdb | 9 | 170 | 1 | 162 | 0.8588 | 0.8128 |
| MGYP000971084142.pdb | 6 | 170 | 1 | 163 | 0.8472 | 0.8014 |
| MGYP003111823819.pdb | 4 | 170 | 1 | 170 | 0.8301 | 0.8005 |
| MGYP002359467480.pdb | 6 | 170 | 1 | 163 | 0.8437 | 0.7999 |
| MGYP003133423797.pdb | 6 | 170 | 1 | 171 | 0.8318 | 0.7992 |
| MGYP002700864558.pdb | 6 | 170 | 1 | 164 | 0.8439 | 0.7925 |
| MGYP000107949102.pdb | 8 | 170 | 1 | 161 | 0.8351 | 0.7854 |
| Fam ID | Seed protein | Member count | Model | Alignment | APIS063 | IMGVR_UViG_3300031923_000006|3300031923|Ga0326331_1000015821 | 75 | HMM model | Member alignment |
|---|
| Hit APIS family | E-Value | Query Start | Query End | Hit Start | Hit End | Immune system | Seed protein |
|---|---|---|---|---|---|---|---|
| APIS003 | 1.80E-74 | 6 | 170 | 37 | 203 | restriction-modification (RM) | AAB36891.1 |
| APIS072 | 3.81E-59 | 1 | 169 | 45 | 223 | IMGVR_UViG_3300039331_000150|3300039331|Ga0169804_01911_10006_10671 | |
| APIS067 | 1.33E-52 | 6 | 169 | 41 | 206 | IMGVR_UViG_3300035506_000204|3300035506|Ga0376461_0000200_6069_6716 | |
| APIS051 | 6.29E-50 | 6 | 169 | 55 | 222 | IMGVR_UViG_3300012016_000701|3300012016|Ga0120387_100082722 |