APIS family ID | APIS048 | |||||||||||||
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Inhibited defense system | ||||||||||||||
CLAN ID | CLAN002 | |||||||||||||
Seed protein property |
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Phage property |
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PMID/References | ||||||||||||||
PDB structures | ; | |||||||||||||
Pfam domains | ||||||||||||||
Phrog | phrog_29522,phrog_717 | |||||||||||||
Host taxa | d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ralstonia; | |||||||||||||
Gene Location | Start: ; End: ; Strand: | |||||||||||||
Description | ||||||||||||||
Note | This family does not have seed protein, but we infer its function is defending cyclic oligonucleotide-based antiphage signaling system (CBASS) because it belongs to the same clan as family APIS002,APIS004 which has seed protein. |
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Fam ID | Seed protein | Member count | Model | Alignment | APIS048 | ON170191_00003 | 84 | HMM model | Member alignment |
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Hit APIS family | E-Value | Query Start | Query End | Hit Start | Hit End | Immune system | Seed protein |
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APIS004 | 2.81E-52 | 11 | 129 | 21 | 116 | cyclic oligonucleotide-based antiphage signaling system (CBASS) | ANA48877.1 |