| APIS family ID | APIS048 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN002 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | ||||||||||||||
| Phrog | phrog_29522,phrog_717 | |||||||||||||
| Host taxa | d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ralstonia; | |||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending cyclic oligonucleotide-based antiphage signaling system (CBASS) because it belongs to the same clan as family APIS002,APIS004 which has seed protein. | |||||||||||||
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| MDNQHKHIKG YRDLSQTEID LMNQIKAKGA ELLQLQAQLV GHLSTALETK AHAARLSTTH | 60 |
| EPWDQGASDE CIELRRFKAA EPMRWAAIGK TDIETGVMAL VRAVAQPAAI | 110 |
| Fam ID | Seed protein | Member count | Model | Alignment |
|---|---|---|---|---|
| APIS048 | ON170191_00003 | 84 | HMM model | Member alignment |
