| APIS family ID | APIS056 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN002 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | ||||||||||||||
| Phrog | phrog_18122,phrog_27100,phrog_4400,phrog_25514,phrog_37109,phrog_16176 | |||||||||||||
| Host taxa | ||||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending Gabija because it belongs to the same clan as family APIS008 which has seed protein. | |||||||||||||
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| AF-Q55D09-F1-model_v4 | 1 | 329 | 601 | 1152 | 0.4784 | 0.3103 |
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP003537377462.pdb | 2 | 352 | 1 | 267 | 0.8469 | 0.7266 |
| MGYP000373333736.pdb | 1 | 223 | 1 | 204 | 0.9324 | 0.7243 |
| MGYP003394315973.pdb | 1 | 229 | 4 | 202 | 0.91 | 0.7026 |
| MGYP001439174798.pdb | 2 | 228 | 1 | 229 | 0.858 | 0.7 |
| MGYP000999235125.pdb | 3 | 221 | 1 | 205 | 0.8998 | 0.6991 |
| MGYP000376116683.pdb | 1 | 248 | 1 | 248 | 0.8366 | 0.6961 |
| MGYP001760742232.pdb | 12 | 225 | 1 | 235 | 0.8353 | 0.6816 |
| MGYP001197111591.pdb | 1 | 364 | 5 | 272 | 0.7415 | 0.6772 |
| MGYP001238726922.pdb | 1 | 221 | 1 | 226 | 0.8643 | 0.6721 |
| MGYP001240424264.pdb | 1 | 227 | 1 | 229 | 0.8262 | 0.6717 |
| Fam ID | Seed protein | Member count | Model | Alignment | APIS056 | IMGVR_UViG_3300020049_002891|3300020049|Ga0206652_100507913 | 6 | HMM model | Member alignment |
|---|
| Hit APIS family | E-Value | Query Start | Query End | Hit Start | Hit End | Immune system | Seed protein |
|---|---|---|---|---|---|---|---|
| APIS008 | 3.90E-81 | 1 | 357 | 23 | 418 | Gabija | Gad2 |
| APIS059 | 1.49E-66 | 2 | 346 | 20 | 399 | KF302034_00153 | |
| APIS089 | 6.71E-28 | 3 | 348 | 2 | 390 | uvig_330502_68 |