| APIS family ID | APIS089 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN007 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | ||||||||||||||
| Phrog | phrog_18122,phrog_27100,phrog_4400,phrog_37109,phrog_16176 | |||||||||||||
| Host taxa | ||||||||||||||
| Gene Location | Start: 29840; End: 30154; Strand: + | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending Gabija because it belongs to the same clan as family APIS008 which has seed protein. | |||||||||||||
| Genome accession | Start | End | Strand | Protein ID | Length | Molecular weight | Charge | Isoelectric point | Function | Phrog | PFAM |
|---|---|---|---|---|---|---|---|---|---|---|---|
| uvig_330502 | 27418 | 28176 | + | uvig_330502_63 | 116 | 13970.76 | 13970.76 | 5.3743 | hypothetical protein | ||
| uvig_330502 | 28169 | 28501 | + | uvig_330502_64 | 123 | 15038.48 | 15038.48 | 4.5556 | hypothetical protein | ||
| uvig_330502 | 28641 | 28979 | + | uvig_330502_65 | 104 | 12118.86 | 12118.86 | 4.9045 | hypothetical protein | ||
| uvig_330502 | 29003 | 29353 | + | uvig_330502_66 | 146 | 17118.50 | 17118.50 | 5.0420 | hypothetical protein | ||
| uvig_330502 | 29368 | 29739 | + | uvig_330502_67 | 109 | 12448.93 | 12448.93 | 5.1161 | hypothetical protein | ||
| uvig_330502 | 29840 | 30154 | + | uvig_330502_68 | 407 | 47822.78 | 47822.78 | 4.5769 | hypothetical protein | phrog_27100 ; phrog_37109 ; phrog_16176 ; phrog_25514 ; phrog_4400 ; phrog_18122 | |
| uvig_330502 | 30138 | 30578 | + | uvig_330502_69 | 82 | 9288.74 | 9288.74 | 4.3775 | hypothetical protein | ||
| uvig_330502 | 30581 | 30910 | + | uvig_330502_70 | 98 | 11527.01 | 11527.01 | 6.2342 | hypothetical protein | ||
| uvig_330502 | 30903 | 32126 | + | uvig_330502_71 | 113 | 13282.24 | 13282.24 | 9.0034 | hypothetical protein | ||
| uvig_330502 | 32126 | 32374 | + | uvig_330502_72 | 123 | 14536.56 | 14536.56 | 4.2389 | hypothetical protein | ||
| uvig_330502 | 32545 | 32841 | + | uvig_330502_73 | 66 | 7764.22 | 7764.22 | 7.4355 | hypothetical protein | phrog_23605 |
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP000999235125.pdb | 2 | 214 | 1 | 206 | 0.889 | 0.6653 |
| MGYP003394315973.pdb | 1 | 228 | 5 | 202 | 0.8938 | 0.665 |
| MGYP001439174798.pdb | 1 | 223 | 1 | 227 | 0.8688 | 0.6639 |
| MGYP003537377462.pdb | 1 | 370 | 1 | 261 | 0.8021 | 0.6582 |
| MGYP001240424264.pdb | 1 | 223 | 2 | 230 | 0.8463 | 0.6527 |
| MGYP000376116683.pdb | 1 | 243 | 3 | 248 | 0.8054 | 0.6431 |
| MGYP001760742232.pdb | 11 | 220 | 1 | 235 | 0.8179 | 0.6411 |
| MGYP001577530143.pdb | 1 | 213 | 7 | 221 | 0.8614 | 0.6314 |
| MGYP000095912522.pdb | 1 | 217 | 2 | 235 | 0.8114 | 0.6268 |
| MGYP001612912023.pdb | 1 | 215 | 10 | 231 | 0.8626 | 0.6264 |
| Fam ID | Seed protein | Member count | Model | Alignment | APIS089 | uvig_330502_68 | 29 | HMM model | Member alignment |
|---|
| Hit APIS family | E-Value | Query Start | Query End | Hit Start | Hit End | Immune system | Seed protein |
|---|---|---|---|---|---|---|---|
| APIS008 | 2.44E-54 | 1 | 386 | 24 | 410 | Gabija | Gad2 |
| APIS059 | 5.84E-29 | 2 | 368 | 21 | 382 | KF302034_00153 | |
| APIS056 | 2.62E-25 | 2 | 391 | 4 | 356 | IMGVR_UViG_3300020049_002891|3300020049|Ga0206652_100507913 |