| APIS family ID | APIS078 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN023 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF17574.5 | |||||||||||||
| Phrog | phrog_2254 | |||||||||||||
| Host taxa | d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Morganella; | |||||||||||||
| Gene Location | Start: 14296; End: 14526; Strand: + | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending toxin-antitoxin (TA) because it belongs to the same clan as family APIS011 which has seed protein. | |||||||||||||
| Genome accession | Start | End | Strand | Protein ID | Length | Molecular weight | Charge | Isoelectric point | Function | Phrog | PFAM |
|---|---|---|---|---|---|---|---|---|---|---|---|
| KX078568 | 11039 | 11263 | + | KX078568_00021 | 74 | 8305.49 | 8305.49 | 8.5108 | hypothetical protein | phrog_6570 | |
| KX078568 | 11260 | 11721 | + | KX078568_00022 | 153 | 17362.85 | 17362.85 | 9.6148 | amidase | phrog_822 ; phrog_19273 ; phrog_35436 ; phrog_1493 | PF01510.28 |
| KX078568 | 11798 | 12034 | + | KX078568_00023 | 78 | 8543.60 | 8543.60 | 4.1422 | hypothetical protein | phrog_38273 | |
| KX078568 | 12064 | 13803 | + | KX078568_00024 | 579 | 64071.12 | 64071.12 | 4.9578 | DNA primase/helicase | phrog_239 ; phrog_47 | PF03796.18 |
| KX078568 | 12064 | 13803 | + | KX078568_00024 | 579 | 64071.12 | 64071.12 | 4.9578 | DNA primase/helicase | phrog_239 ; phrog_47 | PF13155.9 |
| KX078568 | 13898 | 14110 | + | KX078568_00025 | 70 | 7824.12 | 7824.12 | 10.6196 | hypothetical protein | phrog_1950 | PF17565.5 |
| KX078568 | 14296 | 14526 | + | KX078568_00026 | 76 | 9240.35 | 9240.35 | 8.5338 | hypothetical protein | phrog_2254 | PF17574.5 |
| KX078568 | 14604 | 16712 | + | KX078568_00027 | 702 | 79747.37 | 79747.37 | 6.8379 | DNA polymerase I | phrog_16667 ; phrog_17 ; phrog_24147 ; phrog_38876 ; phrog_403 ; phrog_15971 ; phrog_6375 | PF00476.23 |
| KX078568 | 16737 | 17063 | + | KX078568_00028 | 108 | 12755.64 | 12755.64 | 6.5923 | hypothetical protein | phrog_27296 | |
| KX078568 | 17068 | 17355 | + | KX078568_00029 | 95 | 10522.34 | 10522.34 | 5.1184 | Gp5.5-like host HNS inhibition | phrog_17900 ; phrog_1452 | |
| KX078568 | 17376 | 17585 | + | KX078568_00030 | 69 | 7559.63 | 7559.63 | 8.2618 | hypothetical protein | phrog_1334 ; phrog_17900 | |
| KX078568 | 17582 | 17803 | + | KX078568_00031 | 73 | 8377.67 | 8377.67 | 5.0626 | hypothetical protein | phrog_34665 |
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP003595835577.pdb | 2 | 75 | 1 | 77 | 0.7801 | 0.6836 |
| MGYP002678117241.pdb | 1 | 72 | 1 | 72 | 0.748 | 0.6746 |
| Fam ID | Seed protein | Member count | Model | Alignment | APIS078 | KX078568_00026 | 3 | HMM model | Member alignment |
|---|
| Hit APIS family | E-Value | Query Start | Query End | Hit Start | Hit End | Immune system | Seed protein |
|---|---|---|---|---|---|---|---|
| APIS011 | 2.72E-32 | 1 | 69 | 22 | 91 | toxin-antitoxin (TA) | NP_041980.1 |
| APIS080 | 1.14E-24 | 4 | 67 | 10 | 73 | ON602753_00020 | |
| APIS084 | 2.64E-21 | 4 | 73 | 10 | 79 | MW001769_00023 |
| Member | pident | evalue | bitscore | qcovs | phage | host | SourceDB | Pfam | Phrog |
|---|---|---|---|---|---|---|---|---|---|
| EU652770_00024 | 75.862 | 3.65e-33 | 100 | 70% | Morganella phage MmP1 | Morganella | INPHARED | PF17574 | phrog_2254 |
| KX078568_00026 | 100.000 | 8.34e-48 | 154 | 100% | Morganella phage vB_MmoP_MP2 | Morganella | INPHARED | PF17574 | phrog_2254 |
| MW358931_00036 | 75.862 | 1.95e-33 | 101 | 76% | Providencia phage PSTRCR_128 | Providencia | INPHARED | PF17574 | phrog_2254 |
| APIS | Contig | Range |
|---|---|---|
| APIS078 | KX078568 | 11039 - 17803 |