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Seed proteins  | Seed protein 3D structures  |  Structural homologs  |  Family infomation  | Homology to other families  | Family members, sources, and their hosts  

Seed protein information help

APIS family ID APIS086
Inhibited defense system
CLAN ID CLAN022
Seed protein property
Accession ID Gene name Protein length Molecular weight Isoelectric point Charge
ON229909_00228
gene_page: 73 8775.46 10.9149 9.5
Phage property
Phage Assembly id
Escherichia phage vB_EcoM_CE1 ON229909
PMID/References
PDB structures ;
Pfam domains
Phrog phrog_8921,phrog_2375,phrog_3272,phrog_12748
Host taxa d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;
Gene Location Start: ;  End: ;  Strand: 
Description
Note This family does not have seed protein, but we infer its function is defending toxin-antitoxin (TA) because it belongs to the same clan as family APIS012 which has seed protein.

Predicted 3D structure by alphafold2 with pTM = 0.58 Download help

pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;      Download help

Structural homologs

No homologs found in AlphaFold database

No homologs found in esmfold database

Family information      Download help

Fam ID Seed protein Member count Model Alignment
APIS086 ON229909_00228 14 HMM model Member alignment

Host Taxa distribution

Length distribution

Homology to other families       download full data without filtering help

Clan ID: CLAN022

Hit APIS family E-Value Query Start Query End Hit Start Hit End Immune system Seed protein
APIS012 1.81E-49 1 73 14 86 toxin-antitoxin (TA) NP_049652.1

Family members, sources, and their hosts        help

Results of representative protein blast against members.

Member pident evalue bitscore qcovs phage host SourceDB Pfam Phrog
IMGVR_UViG_2974743505_000001|2974743505|2974743655 100.000 3.09e-46 150 84% IMGVR phrog_8921 phrog_2375 phrog_3272 phrog_12748
MGV-GENOME-0377451_82 100.000 1.68e-46 150 90% MGV phrog_8921 phrog_2375 phrog_3272 phrog_12748
MGV-GENOME-0377517_58 57.143 2.53e-20 84.7 99% MGV phrog_8921 phrog_2375 phrog_12748
MK327943_00035 55.714 1.59e-19 82.4 100% Escherichia phage vB_EcoM_G53 Escherichia INPHARED phrog_8921 phrog_2375 phrog_3272 phrog_12748
MK373782_00037 57.143 6.97e-20 83.6 100% Escherichia phage vB_EcoM_KAW3E185 Escherichia INPHARED phrog_8921 phrog_2375 phrog_12748
MK886800_00269 98.630 9.24e-46 149 100% Escherichia phage EcNP1 Escherichia INPHARED phrog_8921 phrog_2375 phrog_3272 phrog_12748
MW883059_00026 98.630 7.20e-45 146 100% Escherichia phage vB_EcoM_SYGD1 Escherichia INPHARED phrog_8921 phrog_2375 phrog_3272 phrog_12748
MZ189262_00034 83.117 2.41e-37 128 92% Escherichia phage W143 Escherichia INPHARED phrog_8921 phrog_2375 phrog_3272 phrog_12748
MZ502380_00035 97.260 1.34e-45 148 100% Escherichia phage vB_EcoM_Nami Escherichia INPHARED phrog_8921 phrog_2375 phrog_3272 phrog_12748
ON229909_00228 100.000 2.73e-46 150 100% Escherichia phage vB_EcoM_CE1 Escherichia INPHARED phrog_8921 phrog_2375 phrog_3272 phrog_12748
ON506924_00037 98.630 1.61e-45 148 100% Escherichia phage vB_EcoM_SCS4 Escherichia INPHARED phrog_8921 phrog_2375 phrog_3272 phrog_12748
ON720975_00159 98.630 4.33e-46 149 100% Salmonella phage GRNsp7 Salmonella INPHARED phrog_8921 phrog_2375 phrog_3272 phrog_12748
OP172786_00049 95.890 3.62e-44 145 100% Escherichia phage ECO07P3 Escherichia INPHARED phrog_8921 phrog_2375 phrog_3272 phrog_12748
OQ703618_00189 57.143 2.54e-20 84.7 96% Escherichia phage GADS24 Escherichia INPHARED phrog_8921 phrog_2375 phrog_12748
APIS Contig Range
APIS086 -

Gene cluster comparison plot by clinker      Download html