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Seed proteins  | Seed protein 3D structures  |  Structural homologs  |  Family infomation  | Homology to other families  | Family members, sources, and their hosts  

Seed protein information help

APIS family ID APIS141
Inhibited defense system
CLAN ID CLAN049
Seed protein property
Accession ID Gene name Protein length Molecular weight Isoelectric point Charge
MT560058_00009
gene_page: 374 43390.55 8.1227 7.5
Phage property
Phage Assembly id
MT560058
PMID/References
PDB structures ;
Pfam domains PF00293.33,PF01467.31
Phrog phrog_395
Host taxa d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pectobacteriaceae;g__Pectobacterium;s__unclassified Pectobacterium species
Gene Location Start: ;  End: ;  Strand: 
Description
Note This family does not have seed protein, but we infer its function is defending NAD+ reconstitution pathway (NARP) because it belongs to the same clan as family APIS170 which has seed protein.

Predicted 3D structure by alphafold2 with pTM = 0.86 Download help

pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;      Download help

Structural homologs

No homologs found in AlphaFold database

Structure homologs against by esmdb (html) ; download full result table

Hit Query start Query end Hit start Hit end TMscore(ali) TMscore(avg)
MGYP002677154047.pdb 21 374 1 351 0.9596 0.9242
MGYP001822565791.pdb 17 374 5 349 0.9397 0.9029
MGYP003365040244.pdb 22 374 1 349 0.942 0.9015
MGYP003574359643.pdb 16 374 5 350 0.9365 0.9008
MGYP001363486701.pdb 24 372 1 339 0.9509 0.9007
MGYP003387177867.pdb 19 374 1 343 0.9404 0.8972
MGYP000655956187.pdb 20 374 1 349 0.9377 0.8969
MGYP000400551823.pdb 15 374 1 339 0.9429 0.893
MGYP000423457310.pdb 20 374 1 342 0.9383 0.892
MGYP001014949113.pdb 9 374 1 357 0.9198 0.8915

Family information      Download help

Fam ID Seed protein Member count Model Alignment
APIS141 MT560058_00009 71 HMM model Member alignment

Host Taxa distribution

Length distribution

Homology to other families       help

Clan ID: CLAN049

APIS141 has no similar APIS family.

Family members, sources, and their hosts        help

Results of representative protein blast against members.
Member pident evalue bitscore qcovs phage host SourceDB Pfam Phrog
MT161459_00205 46.200 2.887E-89 296 0.941% Aeromonas phage Ahp1_CNU-2021 Aeromonas INPHARED PF00293 PF01467 phrog_1198
KU160494_00164 45.000 7.187E-86 286 0.941% Vibrio phage vB_VmeM-32 Vibrio INPHARED PF00293 PF01467 phrog_
IMGVR_UViG_3300031418_000121|3300031418|Ga0308166_100223134 55.300 1.250E-116 375 0.941% IMGVR PF00293 PF01467 phrog_3041 phrog_1198 phrog_395
MN038175_00188 56.000 4.393E-119 382 0.941% Panteoa phage Phynn Pantoea INPHARED PF00293 PF01467 phrog_1198 phrog_395
IMGVR_UViG_3300033696_000004|3300033696|Ga0373164_00001_62866_63978 50.200 2.266E-101 331 0.939% IMGVR PF00293 phrog_1198
MN508817_00079 58.700 2.338E-125 400 0.941% Yersinia phage JC221 Yersinia INPHARED PF00293 PF01467 phrog_3041 phrog_1198 phrog_395
MGV-GENOME-0378021_90 59.200 1.011E-126 404 0.941% MGV PF00293 PF01467 phrog_3041 phrog_1198 phrog_395
OQ571799_00043 58.600 4.382E-125 400 0.941% Enterobacter phage phi5 Enterobacter INPHARED PF00293 PF01467 phrog_1198 phrog_395
MW021751_00126 59.400 1.535E-127 407 0.941% Cronobacter phage vB_CsaM_Cronuts Cronobacter INPHARED PF00293 PF01467 phrog_1198 phrog_395
JN882287_00129 59.000 2.593E-126 403 0.941% Cronobacter phage vB_CsaM_GAP161 Cronobacter INPHARED PF00293 PF01467 phrog_1198 phrog_395
OX335407_00024 58.800 1.247E-125 401 0.941% Klebsiella phage mtp7 Klebsiella INPHARED PF00293 PF01467 phrog_3041 phrog_1198 phrog_395
MH823906_00133 59.600 5.979E-128 408 0.941% Citrobacter phage Maroon Citrobacter INPHARED PF00293 PF01467 PF05636 phrog_1198 phrog_395
KT321315_00133 58.600 4.382E-125 400 0.941% Enterobacter phage phiEap-3 Enterobacter INPHARED PF00293 PF01467 phrog_3041 phrog_1198 phrog_395
MN508624_00086 60.200 7.351E-130 413 0.941% Enterobacter phage EC-F2 Enterobacter INPHARED PF00293 PF01467 phrog_3041 phrog_1198 phrog_395
MW021749_00274 59.400 2.101E-127 406 0.941% Citrobacter phage vB_Cfr_Xman Citrobacter INPHARED PF00293 PF01467 phrog_3041 phrog_1198 phrog_19657 phrog_395
OX335396_00210 59.000 3.551E-126 403 0.941% Klebsiella phage mtp5 Klebsiella INPHARED PF00293 PF01467 phrog_3041 phrog_1198 phrog_395
HE858210_00136 60.200 1.007E-129 413 0.941% Pseudotevenvirus RB43 Unspecified INPHARED PF00293 PF01467 phrog_3041 phrog_1198 phrog_395
MN508623_00080 59.100 1.894E-126 404 0.941% Enterobacter phage EC-F1 Enterobacter INPHARED PF00293 PF01467 phrog_1198 phrog_395
MN508622_00127 59.100 1.894E-126 404 0.941% Enterobacter phage EC-W2 Enterobacter INPHARED PF00293 PF01467 phrog_1198 phrog_395
OP045497_00130 59.000 2.593E-126 403 0.941% Klebsiella phage 150040 Klebsiella INPHARED PF00293 PF01467 phrog_3041 phrog_1198 phrog_395
OL539471_00205 59.500 1.121E-127 407 0.941% Cronobacter phage vB_CsaD_Banach Cronobacter INPHARED PF00293 PF01467 phrog_1198 phrog_395
uvig_581697_35 59.400 2.101E-127 406 0.941% GPD PF00293 PF01467 phrog_1198 phrog_395
OP970827_00196 59.800 1.243E-128 410 0.941% Klebsiella phage Kp_GWPR59 Klebsiella INPHARED PF00293 PF01467 phrog_1198 phrog_395
MZ707157_00089 59.000 2.593E-126 403 0.941% Klebsiella phage PSKm4DII Klebsiella INPHARED PF00293 PF01467 phrog_3041 phrog_1198 phrog_395
HM134276_00130 58.300 3.950E-124 397 0.941% Escherichia phage RB16 Escherichia INPHARED PF00293 PF01467 phrog_1198 phrog_395
uvig_373804_15 59.000 2.593E-126 403 0.941% GPD PF00293 PF01467 phrog_3041 phrog_1198 phrog_395
MZ707156_00090 58.700 1.708E-125 401 0.941% Klebsiella phage PSKm2DI Klebsiella INPHARED PF00293 PF01467 phrog_3041 phrog_1198 phrog_395
AY967407_00136 59.600 5.979E-128 408 0.941% Escherichia phage RB43 Escherichia INPHARED PF00293 PF01467 phrog_3041 phrog_1198 phrog_395
MW250785_00197 58.900 6.655E-126 402 0.941% Escherichia phage UPEC03 Escherichia INPHARED PF00293 PF01467 phrog_1198 phrog_395
MGV-GENOME-0374910_193 58.700 1.708E-125 401 0.941% MGV PF00293 PF01467 phrog_3041 phrog_1198 phrog_395
MT157285_00175 58.600 3.201E-125 400 0.941% Klebsiella phage P-KP2 Klebsiella INPHARED PF00293 PF01467 phrog_3041 phrog_1198 phrog_395
KM236237_00136 59.500 1.121E-127 407 0.941% Citrobacter phage Miller Citrobacter INPHARED PF00293 PF01467 phrog_3041 phrog_1198 phrog_395
KC801932_00131 58.700 2.338E-125 400 0.941% Escherichia phage Lw1 Escherichia INPHARED PF00293 PF01467 phrog_1198 phrog_395
MGV-GENOME-0378171_59 58.800 1.247E-125 401 0.941% MGV PF00293 PF01467 phrog_3041 phrog_1198 phrog_395
IMGVR_UViG_3300045988_015308|3300045988|Ga0495776_110590_118641_119696 58.900 6.655E-126 402 0.941% IMGVR PF00293 PF01467 phrog_1198 phrog_395
KT001919_00132 58.800 9.111E-126 402 0.941% Klebsiella phage Miro Klebsiella INPHARED PF00293 PF01467 phrog_3041 phrog_1198 phrog_395
MGV-GENOME-0375107_191 58.900 6.655E-126 402 0.941% MGV PF00293 PF01467 phrog_1198 phrog_395
KT001918_00131 58.800 9.111E-126 402 0.941% Klebsiella phage Matisse Klebsiella INPHARED PF00293 PF01467 phrog_3041 phrog_1198 phrog_395
uvig_335830_24 59.200 1.011E-126 404 0.941% GPD PF00293 PF01467 phrog_3041 phrog_1198 phrog_395
OP617746_00087 58.700 1.708E-125 401 0.941% Klebsiella phage KP13MC5-1 Klebsiella INPHARED PF00293 PF01467 phrog_3041 phrog_1198 phrog_395
MW629017_00126 60.000 3.537E-129 411 0.941% Enterobacter phage PF-CE2 Enterobacter INPHARED PF00293 PF01467 phrog_1198 phrog_395
KX245890_00136 59.500 1.121E-127 407 0.941% Citrobacter phage vB_CfrM_CfP1 Citrobacter INPHARED PF00293 PF01467 phrog_1198 phrog_19657 phrog_395
KT381880_00134 59.700 2.330E-128 409 0.941% Citrobacter phage Margaery Citrobacter INPHARED PF00293 PF01467 PF05636 phrog_1198 phrog_395
LC589952_00200 60.000 4.843E-129 411 0.941% Enterobacter phage vB_EkoM5VN Enterobacter INPHARED PF00293 PF01467 PF05636 phrog_1198 phrog_395
OK631812_00199 58.900 4.861E-126 402 0.941% Raoultella phage Rpl1 Raoultella INPHARED PF00293 PF01467 phrog_3041 phrog_1198 phrog_395
KX443552_00135 59.700 3.190E-128 409 0.941% Cronobacter phage vB_CsaM_leE Cronobacter INPHARED PF00293 PF01467 phrog_1198 phrog_395
KR869820_00066 59.400 2.101E-127 406 0.941% Citrobacter phage IME-CF2 Citrobacter INPHARED PF00293 PF01467 phrog_1198 phrog_19657 phrog_395
OL539470_00184 59.800 1.702E-128 409 0.941% Cronobacter phage vB_CsaM_Invicta Cronobacter INPHARED PF00293 PF01467 phrog_3041 phrog_1198 phrog_395
LR746310_00144 58.600 3.201E-125 400 0.941% Klebsiella phage vB_KpnM_05F Klebsiella INPHARED PF00293 PF01467 phrog_3041 phrog_1198 phrog_395
MT341500_00139 60.000 6.630E-129 411 0.939% Enterobacter phage EBPL Enterobacter INPHARED PF00293 PF01467 phrog_1198 phrog_395
MW448170_00132 58.600 4.382E-125 400 0.941% Klebsiella phage vB_KpnM_M1 Klebsiella INPHARED PF00293 PF01467 phrog_3041 phrog_1198 phrog_395
KX431559_00136 59.100 1.894E-126 404 0.941% Cronobacter phage vB_CsaM_leB Cronobacter INPHARED PF00293 PF01467 phrog_1198 phrog_395
uvig_279033_8 58.800 1.247E-125 401 0.941% GPD PF00293 PF01467 phrog_3041 phrog_1198 phrog_395
MT334653_00137 60.200 7.351E-130 413 0.941% Buttiauxella phage vB_ButM_GuL6 Buttiauxella INPHARED PF00293 PF01467 phrog_3041 phrog_1198 phrog_395
OQ267591_00142 58.800 9.111E-126 402 0.941% Klebsiella phage phi_KPN_S3 Klebsiella INPHARED PF00293 PF01467 phrog_3041 phrog_1198 phrog_395
ON515458_00132 58.800 9.111E-126 402 0.941% Klebsiella phage BL02 Klebsiella INPHARED PF00293 PF01467 phrog_3041 phrog_1198 phrog_395
MW021756_00129 58.900 4.861E-126 402 0.941% Cronobacter phage vB_CsaM_SemperBestia Cronobacter INPHARED PF00293 PF01467 phrog_1198 phrog_395
OP684128_00081 59.200 1.011E-126 404 0.941% Klebsiella phage pR7_1 Klebsiella INPHARED PF00293 PF01467 phrog_3041 phrog_1198 phrog_395
OL551674_00146 59.600 4.367E-128 408 0.941% Enterobacter phage vB_EcRAM-01 Enterobacter INPHARED PF00293 PF01467 phrog_3041 phrog_1198 phrog_395
uvig_510342_14 58.500 8.213E-125 399 0.941% GPD PF00293 PF01467 phrog_3041 phrog_1198 phrog_395
MT560058_00009 100.000 5.325E-254 772 1.000% Pectobacterium phage POP12 Pectobacterium INPHARED PF00293 PF01467 phrog_395
AY266303_00309 46.600 4.416E-90 298 0.939% Aeromonas phage Aeh1 Aeromonas INPHARED PF00293 PF01467 phrog_1198 phrog_395
MN871440_00100 46.200 3.947E-89 295 0.939% Aeromonas phage AsFcp_1 Aeromonas INPHARED PF00293 PF01467 phrog_1198 phrog_395
HM452126_00075 46.700 2.361E-90 299 0.939% Aeromonas phage phiAS5 Aeromonas INPHARED PF00293 PF01467 phrog_1198 phrog_395
MG250483_00301 47.300 2.952E-92 304 0.939% Aeromonas phage Ah1 Aeromonas INPHARED PF00293 PF01467 phrog_1198 phrog_395
GU396103_00298 46.400 1.544E-89 297 0.939% Aeromonas phage PX29 Aeromonas INPHARED PF00293 PF01467 phrog_1198 phrog_395
OQ331036_00021 57.700 2.889E-121 389 0.933% Yersinia phage MHG19 Yersinia INPHARED PF00293 PF01467 phrog_3041 phrog_3462 phrog_1198
MGV-GENOME-0378626_203 59.100 7.382E-127 405 0.944% MGV PF00293 PF01467 phrog_3041 phrog_19657 phrog_395
MW082584_00281 55.000 1.247E-113 366 0.933% Serratia phage 4S Serratia INPHARED PF00293 PF01467 phrog_19657
IMGVR_UViG_3300045988_066415|3300045988|Ga0495776_014907_135319_136374 59.100 7.382E-127 405 0.944% IMGVR PF00293 PF01467 phrog_3041 phrog_19657 phrog_395
OM638103_00094 59.300 1.535E-127 407 0.944% Cronobacter phage LPCS28 Cronobacter INPHARED PF00293 PF01467 phrog_3041 phrog_19657 phrog_395