| APIS family ID | APIS151 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN049 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF00293.33,PF01467.31,PF00293.33,PF01467.31 | |||||||||||||
| Phrog | phrog_3041,phrog_3041,phrog_19657,phrog_19657,phrog_1198,phrog_1198 | |||||||||||||
| Host taxa | d__Bacteria;p__Proteobacteria;c__Betaproteobacteria;o__Burkholderiales;f__Comamonadaceae;g__Acidovorax;s__unclassified Acidovorax species | |||||||||||||
| Gene Location | Start: 112251; End: 113258; Strand: + | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending NAD+ reconstitution pathway (NARP) because it belongs to the same clan as family APIS170 which has seed protein. | |||||||||||||
| Genome accession | Start | End | Strand | Protein ID | Length | Molecular weight | Charge | Isoelectric point | Function | Phrog | PFAM |
|---|---|---|---|---|---|---|---|---|---|---|---|
| KY979132 | 110955 | 111089 | + | KY979132_00173 | 44 | 4689.44 | -3.0 | 4.1955 | hypothetical protein | ||
| KY979132 | 111070 | 111354 | + | KY979132_00174 | 94 | 10900.65 | -5.0 | 4.4341 | hypothetical protein | ||
| KY979132 | 111351 | 111563 | + | KY979132_00175 | 70 | 7651.71 | 0.5 | 6.9727 | hypothetical protein | ||
| KY979132 | 111520 | 111852 | + | KY979132_00176 | 110 | 12358.89 | -6.0 | 4.3637 | hypothetical protein | ||
| KY979132 | 111849 | 112220 | + | KY979132_00177 | 123 | 13939.79 | 0.5 | 6.7013 | hypothetical protein | ||
| KY979132 | 112251 | 113258 | + | KY979132_00178 | 335 | 37984.94 | -4.5 | 5.7797 | Bifunctional NMN adenylyltransferase/Nudix hydrolase | phrog_3041 ; phrog_3041 ; phrog_1198 ; phrog_1198 ; phrog_19657 ; phrog_19657 | PF00293.33 ;PF01467.31 ;PF00293.33 ;PF01467.31 |
| KY979132 | 113272 | 114663 | + | KY979132_00179 | 463 | 51975.77 | -1.5 | 6.3239 | nicotinamide phosphoribosyl transferase | PF04095.21 ;PF18127.6 | |
| KY979132 | 114763 | 115311 | + | KY979132_00180 | 182 | 19604.40 | 3.0 | 8.2700 | hypothetical protein | ||
| KY979132 | 115314 | 115901 | + | KY979132_00181 | 195 | 21984.13 | 1.0 | 6.7613 | hypothetical protein | phrog_8071 ; phrog_2859 | |
| KY979132 | 115883 | 117424 | + | KY979132_00182 | 513 | 54890.15 | -4.0 | 5.4452 | hypothetical protein | phrog_37978 | PF00622.34 ;PF13385.12 |
| KY979132 | 117459 | 117722 | + | KY979132_00183 | 87 | 9759.34 | -3.0 | 4.6062 | hypothetical protein |
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP001363486701.pdb | 3 | 318 | 1 | 339 | 0.8815 | 0.8657 |
| MGYP001592028481.pdb | 1 | 321 | 2 | 341 | 0.8821 | 0.8647 |
| MGYP003598749629.pdb | 1 | 320 | 7 | 336 | 0.8663 | 0.8553 |
| MGYP003583100245.pdb | 1 | 324 | 2 | 341 | 0.8712 | 0.8524 |
| MGYP000138452357.pdb | 1 | 320 | 3 | 344 | 0.8738 | 0.8521 |
| MGYP003387177867.pdb | 2 | 322 | 5 | 345 | 0.8745 | 0.851 |
| MGYP003574359643.pdb | 1 | 320 | 11 | 350 | 0.8806 | 0.8505 |
| MGYP000423457310.pdb | 1 | 320 | 1 | 342 | 0.8695 | 0.8497 |
| MGYP000400551823.pdb | 1 | 320 | 2 | 339 | 0.8674 | 0.8489 |
| MGYP001371600575.pdb | 1 | 320 | 2 | 351 | 0.8767 | 0.8477 |
| Fam ID | Seed protein | Member count | Model | Alignment | APIS151 | KY979132_00178 | 56 | HMM model | Member alignment |
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