| APIS family ID | APIS158 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN049 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF00293.33,PF01467.31,PF00293.33,PF01467.31 | |||||||||||||
| Phrog | ||||||||||||||
| Host taxa | d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__unclassified Xanthomonas species | |||||||||||||
| Gene Location | Start: 139407; End: 140498; Strand: + | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending NAD+ reconstitution pathway (NARP) because it belongs to the same clan as family APIS170 which has seed protein. | |||||||||||||
| Genome accession | Start | End | Strand | Protein ID | Length | Molecular weight | Charge | Isoelectric point | Function | Phrog | PFAM |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MW825358 | 135135 | 135347 | + | MW825358_00141 | 70 | 7439.05 | 2.5 | 9.1293 | hypothetical protein | ||
| MW825358 | 136026 | 136229 | + | MW825358_00144 | 67 | 8083.88 | -6.0 | 4.2250 | hypothetical protein | ||
| MW825358 | 136210 | 136509 | + | MW825358_00145 | 99 | 11074.80 | -0.5 | 5.8598 | hypothetical protein | ||
| MW825358 | 137145 | 137684 | + | MW825358_00146 | 179 | 21037.94 | 6.5 | 8.6649 | HNH endonuclease | phrog_14913 ; phrog_99 | PF13392.11 |
| MW825358 | 138211 | 139173 | + | MW825358_00149 | 320 | 36448.82 | -15.0 | 4.5844 | hypothetical protein | ||
| MW825358 | 139407 | 140498 | + | MW825358_00150 | 363 | 41561.30 | 7.0 | 7.4616 | Bifunctional NMN adenylyltransferase/Nudix hydrolase | PF00293.33 ;PF01467.31 ;PF00293.33 ;PF01467.31 | |
| MW825358 | 140559 | 141959 | + | MW825358_00151 | 466 | 51874.72 | 0.0 | 6.5022 | nicotinamide phosphoribosyl transferase | PF04095.21 ;PF18127.6 ;PF04095.21 ;PF18127.6 | |
| MW825358 | 142123 | 142704 | + | MW825358_00152 | 193 | 21892.27 | 2.0 | 7.3205 | hypothetical protein | ||
| MW825358 | 142979 | 143278 | + | MW825358_00153 | 99 | 10996.66 | 0.5 | 6.9784 | hypothetical protein | ||
| MW825358 | 143284 | 143520 | + | MW825358_00154 | 78 | 8446.88 | 4.0 | 10.4287 | hypothetical protein | ||
| MW825358 | 144720 | 145016 | + | MW825358_00156 | 98 | 10721.76 | -2.5 | 4.6140 | hypothetical protein |
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP001111241452.pdb | 3 | 355 | 1 | 344 | 0.9703 | 0.9403 |
| MGYP001437013965.pdb | 10 | 356 | 1 | 343 | 0.9703 | 0.9388 |
| MGYP001592028481.pdb | 1 | 354 | 1 | 341 | 0.9664 | 0.9319 |
| MGYP003333461766.pdb | 1 | 354 | 1 | 349 | 0.9541 | 0.9297 |
| MGYP000138452357.pdb | 1 | 355 | 2 | 344 | 0.9591 | 0.9288 |
| MGYP000400551823.pdb | 1 | 354 | 1 | 340 | 0.9644 | 0.9282 |
| MGYP003429311892.pdb | 1 | 355 | 5 | 359 | 0.9379 | 0.9263 |
| MGYP001390947301.pdb | 1 | 355 | 1 | 350 | 0.9495 | 0.9262 |
| MGYP003652350255.pdb | 2 | 355 | 1 | 342 | 0.9578 | 0.9246 |
| MGYP001014949113.pdb | 1 | 355 | 8 | 358 | 0.9371 | 0.9208 |
| Fam ID | Seed protein | Member count | Model | Alignment | APIS158 | MW825358_00150 | 153 | HMM model | Member alignment |
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