| Basic Information | |
|---|---|
| Species | Ricinus communis |
| Cazyme ID | 29988.m000125 |
| Family | CBM13 |
| Protein Properties | Length: 574 Molecular Weight: 64670.9 Isoelectric Point: 5.5192 |
| Chromosome | Chromosome/Scaffold: 29988 Start: 49783 End: 51507 |
| Description | |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CBM13 | 461 | 571 | 1.3e-21 |
| DLCLQANSGNVWLEECASNRAEQQWALYADDSIRPQQNQDNCLTSDASTQGTIVKILSCSPGSSGQRWMWKNDGTIWNLYYELVLDVRQSDPSLKQIIIW PFTGNPNQKWL | |||
| Full Sequence |
|---|
| Protein Sequence Length: 574 Download |
| MKLEGNFIVW VYAVATWLWL GSISGWSFTS QDNIPLLKQY PTITFTTAGA TAESYRTFIN 60 AMRRQLLIGD DVRHQIPVLR NRVGFPINQR FVLVQLTNQA ELSITLAVDV TNVYVVGYRA 120 GNNAYFFHPD NPEDAEAITH LFTDAQSRQT FSFGGNYDRL EQLGGLRENI ELGNGPLEDA 180 ISALYYYSTG GTQLPALARS FMVCIQMISE AVRFQYIEGE MRTRIRYNRR TAPDASVIRL 240 ENSWRRLSTA IQESNQGAFA SPIQLQRRNG STFDVYEVST LIPIIALMVY RCAPPPSLQL 300 PYLIKQVVPT FNDDVCVDPE PTVRIVGRND LCVDVRDGEF HNGNPIQLWP CKSNTDANQL 360 WTLKRDNTIR SNGKCSTTYG YNPGHYVMIY DCNTAVTDAT RWQIWDNGTI INPRSSLVLA 420 ATSGNSGTTL TVQTNIYATS QGWLPTNNTQ PFVTSILGLY DLCLQANSGN VWLEECASNR 480 AEQQWALYAD DSIRPQQNQD NCLTSDASTQ GTIVKILSCS PGSSGQRWMW KNDGTIWNLY 540 YELVLDVRQS DPSLKQIIIW PFTGNPNQKW LSLL |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd00161 | RICIN | 3.0e-7 | 493 | 570 | 79 | + Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture. | ||
| cd00161 | RICIN | 6.0e-26 | 322 | 444 | 126 | + Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture. | ||
| cd00161 | RICIN | 1.0e-26 | 456 | 571 | 120 | + Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture. | ||
| pfam00652 | Ricin_B_lectin | 1.0e-26 | 321 | 443 | 126 | + Ricin-type beta-trefoil lectin domain. | ||
| pfam00161 | RIP | 3.0e-72 | 44 | 254 | 212 | + Ribosome inactivating protein. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0017148 | negative regulation of translation |
| GO:0030598 | rRNA N-glycosylase activity |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2vlc_B | 0 | 35 | 574 | 18 | 570 | A Chain A, Crystal Structure Of Natural Cinnamomin (Isoform Iii) |
| PDB | 2vlc_A | 0 | 35 | 574 | 18 | 570 | A Chain A, Crystal Structure Of Natural Cinnamomin (Isoform Iii) |
| PDB | 3rtj_B | 0 | 314 | 574 | 2 | 262 | A Chain A, Crystal Structure Of Natural Cinnamomin (Isoform Iii) |
| PDB | 3rti_B | 0 | 314 | 574 | 2 | 262 | A Chain A, Crystal Structure Of Natural Cinnamomin (Isoform Iii) |
| PDB | 2aai_B | 0 | 314 | 574 | 2 | 262 | B Chain B, Crystallographic Refinement Of Ricin To 2.5 Angstroms |
