| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.006G030300.1 |
| Family | CBM13 |
| Protein Properties | Length: 348 Molecular Weight: 37970.4 Isoelectric Point: 8.6728 |
| Chromosome | Chromosome/Scaffold: 06 Start: 2064450 End: 2066060 |
| Description | |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM13 | 241 | 346 | 3.8e-22 |
| KLAKCVKNKTEQKWNFYADGSIRLDANTDLCLTSNGNTRGSSVVVVSCSPVSYNQRWTFGDSHGKASFTILNVNNALVLDVSYSILNPFKIIIWDFNGGA NQVWRL | |||
| Full Sequence |
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| Protein Sequence Length: 348 Download |
| MTCNDRNHPS SLLNSHFLTR VPCIQTFIIK QLKGNMKLWI VVATYLLSTV LVVSTEAGNM 60 DSLAIDQTGR DMIIRSVVPK NDDVVSGAKS TQHIVGINNL CVDVLLDLYF DGNVVQLKPC 120 KSNGDVNQQW SLEKDGTIQS NGMCLATNGT SPGSDVFIYD CNKVKASATI WKVQKDGSIL 180 NPSSSLVLTS KSGKSGSLLT LETNVYALGQ GWNFTSVSKP SPKSIVGLWG YCLEFNKYVP 240 KLAKCVKNKT EQKWNFYADG SIRLDANTDL CLTSNGNTRG SSVVVVSCSP VSYNQRWTFG 300 DSHGKASFTI LNVNNALVLD VSYSILNPFK IIIWDFNGGA NQVWRLS* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00652 | Ricin_B_lectin | 2.0e-5 | 258 | 346 | 90 | + Ricin-type beta-trefoil lectin domain. | ||
| pfam00652 | Ricin_B_lectin | 2.0e-7 | 95 | 162 | 70 | + Ricin-type beta-trefoil lectin domain. | ||
| pfam00652 | Ricin_B_lectin | 4.0e-12 | 93 | 182 | 93 | + Ricin-type beta-trefoil lectin domain. | ||
| pfam00652 | Ricin_B_lectin | 3.0e-15 | 225 | 344 | 125 | + Ricin-type beta-trefoil lectin domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAA63506.1 | 0 | 83 | 344 | 2 | 259 | ricin E beta chain [Ricinus communis] |
| GenBank | ACY38598.1 | 0 | 93 | 344 | 12 | 258 | ricin B chain [Ricinus communis] |
| RefSeq | XP_002307941.1 | 0 | 36 | 298 | 1 | 263 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002307943.1 | 0 | 72 | 347 | 1 | 276 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002334079.1 | 0 | 29 | 246 | 1 | 218 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3rtj_B | 0 | 83 | 344 | 2 | 258 | A Chain A, Characterization And Engineering Of The Bifunctional N- And O-glucosyltransferase Involved In Xenobiotic Metabolism In Plants |
| PDB | 3rti_B | 0 | 83 | 344 | 2 | 258 | A Chain A, Characterization And Engineering Of The Bifunctional N- And O-glucosyltransferase Involved In Xenobiotic Metabolism In Plants |
| PDB | 2aai_B | 0 | 83 | 344 | 2 | 258 | B Chain B, Crystallographic Refinement Of Ricin To 2.5 Angstroms |
| PDB | 1rzo_D | 0 | 83 | 344 | 2 | 258 | B Chain B, Agglutinin From Ricinus Communis With Galactoaza |
| PDB | 1rzo_B | 0 | 83 | 344 | 2 | 258 | B Chain B, Agglutinin From Ricinus Communis With Galactoaza |
| Transmembrane Domains | ||||
|---|---|---|---|---|
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| Start | End | |||
| 38 | 60 | |||
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| DV463295 | 247 | 72 | 318 | 0 |
| BU878720 | 221 | 17 | 237 | 0 |
| CV278872 | 201 | 148 | 348 | 0 |
| DN492151 | 207 | 142 | 348 | 0 |
| CV278872 | 78 | 90 | 164 | 1.3 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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