| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.006G030200.1 |
| Family | CBM13 |
| Protein Properties | Length: 320 Molecular Weight: 34881.7 Isoelectric Point: 8.3657 |
| Chromosome | Chromosome/Scaffold: 06 Start: 2049801 End: 2051436 |
| Description | |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM13 | 213 | 318 | 2.7e-21 |
| KLAKCVKNKTEQKWNFYADGSIRLDANTDLCLTSNGNTKGSLVLVVSCSPVSSNQRWTFGDSHGKAYFPILNVNNALVLDVSYSILNLFEIIIWDFNGGA NQVWRL | |||
| Full Sequence |
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| Protein Sequence Length: 320 Download |
| MKQLKGNTKL WIVVAAYLLS TVLVASTEAG NMDSLAEDQT GRDMIIRSVV PKNDDVVSGS 60 KSTQHIVGIN NLCVDVFLEL YFDENIVQLY PCKSDGDVNQ QWSLEKNGTI QSKGKCLATN 120 GTSPGSYVFI SDCNKVKASA TIWKVQKDGS ILNPSSSLVL TSKSGKSGSL LTLETNVYAL 180 GQGWNFTSVS KPSPKSIVGL WGYCLEFNKY VPKLAKCVKN KTEQKWNFYA DGSIRLDANT 240 DLCLTSNGNT KGSLVLVVSC SPVSSNQRWT FGDSHGKAYF PILNVNNALV LDVSYSILNL 300 FEIIIWDFNG GANQVWRLS* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00652 | Ricin_B_lectin | 1.0e-10 | 65 | 154 | 93 | + Ricin-type beta-trefoil lectin domain. | ||
| cd00161 | RICIN | 1.0e-12 | 65 | 154 | 92 | + Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture. | ||
| pfam00652 | Ricin_B_lectin | 4.0e-15 | 197 | 316 | 125 | + Ricin-type beta-trefoil lectin domain. | ||
| cd00161 | RICIN | 1.0e-15 | 197 | 318 | 126 | + Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAA63506.1 | 0 | 55 | 316 | 2 | 259 | ricin E beta chain [Ricinus communis] |
| GenBank | ACY38598.1 | 0 | 65 | 316 | 12 | 258 | ricin B chain [Ricinus communis] |
| RefSeq | XP_002307941.1 | 0 | 9 | 270 | 2 | 263 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002307943.1 | 0 | 44 | 319 | 1 | 276 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002334079.1 | 0 | 1 | 218 | 1 | 218 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3rtj_B | 0 | 55 | 316 | 2 | 258 | A Chain A, Characterization And Engineering Of The Bifunctional N- And O-glucosyltransferase Involved In Xenobiotic Metabolism In Plants |
| PDB | 3rti_B | 0 | 55 | 316 | 2 | 258 | A Chain A, Characterization And Engineering Of The Bifunctional N- And O-glucosyltransferase Involved In Xenobiotic Metabolism In Plants |
| PDB | 2aai_B | 0 | 55 | 316 | 2 | 258 | B Chain B, Crystallographic Refinement Of Ricin To 2.5 Angstroms |
| PDB | 1rzo_D | 0 | 55 | 316 | 2 | 258 | B Chain B, Agglutinin From Ricinus Communis With Galactoaza |
| PDB | 1rzo_B | 0 | 55 | 316 | 2 | 258 | B Chain B, Agglutinin From Ricinus Communis With Galactoaza |
| Signal Peptide | ||||
|---|---|---|---|---|
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| Cleavage Site | ||||
| 29 | ||||
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DV463295 | 247 | 44 | 290 | 0 |
| BU878720 | 209 | 1 | 209 | 0 |
| DN492151 | 208 | 113 | 320 | 0 |
| CN524695 | 210 | 111 | 320 | 0 |
| DB882630 | 190 | 1 | 189 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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