| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.006G030000.1 |
| Family | CBM13 |
| Protein Properties | Length: 348 Molecular Weight: 38405.7 Isoelectric Point: 7.6125 |
| Chromosome | Chromosome/Scaffold: 06 Start: 2036819 End: 2038474 |
| Description | |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CBM13 | 241 | 346 | 5.7e-21 |
| KLAKCVENKTEQKWNFYADGSIRLDANTDLCLTSNGNTKGSLVLVVSCSPVSSNQRWTFGDSHGTAYFPILNVNNALVLDVSYSILNLFEIIIWKFNGGA NQIWRL | |||
| Full Sequence |
|---|
| Protein Sequence Length: 348 Download |
| MTCNDRNHPS PLLNSHFLIR VLCIQTFNMK QLKGNMKLWI VVAAYLLSTV LVASTEAGNM 60 DSLAEDQTGR DMIIRSVVPK NDDVVYDAES TQHIVGVNNL CVDVFNGYYF DGNVVQLYPC 120 KSNGDVNQQW SLEEDGTIQS KGKCLATNGT SPGSYVFISD CNKVKASATI WKVQKDGSIL 180 NPSSSLVLTS KSGKSGSLLT LETNVYALRQ GWRFTDVSKP SPKSIVGLWD YCLEFNKYVP 240 KLAKCVENKT EQKWNFYADG SIRLDANTDL CLTSNGNTKG SLVLVVSCSP VSSNQRWTFG 300 DSHGTAYFPI LNVNNALVLD VSYSILNLFE IIIWKFNGGA NQIWRLS* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd00161 | RICIN | 0.003 | 260 | 346 | 88 | + Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture. | ||
| cd00161 | RICIN | 2.0e-14 | 93 | 182 | 92 | + Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture. | ||
| pfam00652 | Ricin_B_lectin | 2.0e-14 | 225 | 344 | 125 | + Ricin-type beta-trefoil lectin domain. | ||
| cd00161 | RICIN | 7.0e-16 | 225 | 346 | 126 | + Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAA63506.1 | 0 | 83 | 344 | 2 | 259 | ricin E beta chain [Ricinus communis] |
| RefSeq | XP_002307941.1 | 0 | 36 | 298 | 1 | 263 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002307943.1 | 0 | 72 | 347 | 1 | 276 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002334079.1 | 0 | 29 | 246 | 1 | 218 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002532189.1 | 0 | 73 | 344 | 303 | 570 | ricin-agglutinin family protein [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3rtj_B | 0 | 83 | 344 | 2 | 258 | A Chain A, Characterization And Engineering Of The Bifunctional N- And O-glucosyltransferase Involved In Xenobiotic Metabolism In Plants |
| PDB | 3rti_B | 0 | 83 | 344 | 2 | 258 | A Chain A, Characterization And Engineering Of The Bifunctional N- And O-glucosyltransferase Involved In Xenobiotic Metabolism In Plants |
| PDB | 2aai_B | 0 | 83 | 344 | 2 | 258 | B Chain B, Crystallographic Refinement Of Ricin To 2.5 Angstroms |
| PDB | 1rzo_D | 0 | 83 | 344 | 2 | 258 | B Chain B, Agglutinin From Ricinus Communis With Galactoaza |
| PDB | 1rzo_B | 0 | 83 | 344 | 2 | 258 | B Chain B, Agglutinin From Ricinus Communis With Galactoaza |
| Transmembrane Domains | ||||
|---|---|---|---|---|
 | ||||
| Start | End | |||
| 38 | 55 | |||
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
 | ||||
| Hit | Length | Start | End | EValue |
| DV463295 | 247 | 72 | 318 | 0 |
| BU878720 | 221 | 17 | 237 | 0 |
| CN524695 | 210 | 139 | 348 | 0 |
| DN492151 | 208 | 141 | 348 | 0 |
| DB877072 | 172 | 11 | 182 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
| Phylogeny |
|---|
 |