| Basic Information | |
|---|---|
| Species | Prunus persica |
| Cazyme ID | ppa021254m |
| Family | GH28 |
| Protein Properties | Length: 504 Molecular Weight: 53563.8 Isoelectric Point: 5.7606 |
| Chromosome | Chromosome/Scaffold: 1 Start: 25024662 End: 25027250 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 200 | 301 | 5.2e-25 |
| HGIRIKTWQGESRYARNIMFEKITLDRAQNSIIIDQFYCNRDHKCKTQASAVSVDDVKYIDFEGTSASEEAIKLDCDQNSSCHNIIMDRIKVTSDVPGAE PT | |||
| GH28 | 37 | 202 | 7.8e-35 |
| EAIGAPTLVIPEQKTFLLQPIKFEGPCNSNSAHVQHILEKLVAPKTLDAWKGCESSDWLQFSNLGNLLVDGFTSMDAIILNSSGLTHLNSARAHIAISNC NNVYVSHLTITALEDSPNTDGIDMSSSHYVFIQHSTIGTRDDCIAINGGCFDLNIANIVCGPGHGI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 504 Download |
| KVELRVGADA GAIGSGLVGQ GEAFVKAWEE LCGESDEAIG APTLVIPEQK TFLLQPIKFE 60 GPCNSNSAHV QHILEKLVAP KTLDAWKGCE SSDWLQFSNL GNLLVDGFTS MDAIILNSSG 120 LTHLNSARAH IAISNCNNVY VSHLTITALE DSPNTDGIDM SSSHYVFIQH STIGTRDDCI 180 AINGGCFDLN IANIVCGPGH GIRIKTWQGE SRYARNIMFE KITLDRAQNS IIIDQFYCNR 240 DHKCKTQASA VSVDDVKYID FEGTSASEEA IKLDCDQNSS CHNIIMDRIK VTSDVPGAEP 300 TTYSPATPPQ ALPLPPTPLP SLPLPVTPPP SLSMPSIDQP SLPMLAEPSL ALILPATPPP 360 APHLPDTPPA SPPVLATPPP SPPMPATPPL ALILPATPPP LTATSPPSLP MPATPLPILP 420 PLAPPLPNKP RPTLPLPTTP PLARPLRNRP RPLPLPTMPS PAPPLPFTPL ASLVPTLPPP 480 ALPATPQMSF KGYSVRPRAP VWY* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-48 | 38 | 293 | 315 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 4.0e-58 | 8 | 291 | 347 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 9.0e-65 | 9 | 293 | 346 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 6.0e-65 | 11 | 298 | 344 | + Probable polygalacturonase At3g15720 | ||
| PLN03010 | PLN03010 | 2.0e-73 | 11 | 292 | 327 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_680757.1 | 0 | 23 | 383 | 5 | 424 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002266543.1 | 0 | 9 | 322 | 24 | 371 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002324855.1 | 0 | 9 | 316 | 31 | 389 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002515526.1 | 0 | 9 | 291 | 32 | 361 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
| RefSeq | XP_002515527.1 | 0 | 8 | 328 | 31 | 363 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 0.0000005 | 138 | 237 | 132 | 235 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.0000005 | 138 | 237 | 132 | 235 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.0000005 | 138 | 237 | 132 | 235 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 0.0000005 | 138 | 237 | 132 | 235 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 0.0000005 | 138 | 237 | 132 | 235 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
 | ||||
| Hit | Length | Start | End | EValue |
| DR556291 | 202 | 121 | 291 | 1.99965e-42 |
| DR546551 | 202 | 121 | 291 | 1.99965e-42 |
| EL436301 | 224 | 11 | 202 | 9.00054e-42 |
| EL454770 | 256 | 11 | 231 | 4.00001e-40 |
| CK252914 | 220 | 108 | 296 | 2e-39 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
| Phylogeny |
|---|
 |